Plesiomonas shigelloides: SAMEA2665130_2151
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Entry
SAMEA2665130_2151 CDS
T04378
Symbol
rlmC
Name
(GenBank) 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
pshi
Plesiomonas shigelloides
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pshi03009
]
SAMEA2665130_2151 (rlmC)
Enzymes [BR:
pshi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
SAMEA2665130_2151 (rlmC)
Ribosome biogenesis [BR:
pshi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SAMEA2665130_2151 (rlmC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
Methyltransf_12
Cons_hypoth95
Methyltransf_11
Methyltransf_ANTKMT
TRM5-TYW2_MTfase
Motif
Other DBs
NCBI-ProteinID:
SBT61647
LinkDB
All DBs
Position
1:complement(2371968..2373110)
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AA seq
380 aa
AA seq
DB search
MQCAHFQAGECRSCHWLDRPYSEQLQQKQHDLQALFTPIAVGQWLPAVSGPEQAFRNKAK
MVVSGAVERPLLGICDAAGNGVDLCDCPLYPAAFQALFPALKQFIGRAGLTPYQIARRRG
ELKYLLLTQSTLSGEFMLRFVLRSDSKLPLIRRELGWLQAQLPQLRVISVNIQPVHMAIM
EGEQEIILTADEALEEQFNRVPLYIRPRSFFQTNPDVAAKLYATARDWVRALPVHSLWDL
FCGVGGFGLHCATPDMALTGIEISPEAIACAQKSAATLGLNKVQFQALDSADFAHSRDAV
PDLVLVNPPRRGIGVALCEYLSRMAPEYILYSSCNAVSMQADVARLTANGQYQLLQMQLF
DMFPHTAHYEVLGLLKKSAC
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgtgcgcactttcaggccggtgaatgccgctcctgtcattggcttgaccgccct
tattccgagcaactgcagcaaaaacagcatgacttgcaggcgttatttaccccgattgcg
gtcggtcagtggttaccggcagtttctggccctgagcaggcgtttcgcaacaaagctaaa
atggtggtcagtggcgcggtagagcgtccgctgctgggcatttgcgatgccgccggcaat
ggtgtcgacctgtgtgattgtccgctctatccggcggcgtttcaggcgctattccccgcc
ttaaagcaatttattggccgcgccggtttaacgccttatcagattgcacggcgccgtggc
gagcttaaatatctgctgttaacgcaaagtaccctcagtggcgaattcatgctgcgcttt
gtgctgcgctctgacagcaaattaccgttaattcgccgtgaactgggctggctgcaagcg
cagttgccacagttacgggtgatctcggtgaatatccagccggtgcacatggccattatg
gaaggggagcaggagattatcctgacggcggatgaagcgctagaagagcagtttaatcgg
gtgccgctgtatattcgcccgcgtagctttttccagaccaaccccgatgttgcggccaaa
ttgtatgcgacggcgcgtgattgggtgcgtgcgttaccggtgcattccctgtgggatctg
ttttgtggcgtcggcgggtttggcttgcactgcgccacgcccgacatggcgttaaccggt
attgagatttccccagaagccattgcttgtgcgcaaaaatcggcagcgaccttggggcta
aacaaggtgcagtttcaggcgttagattcggcggattttgcccatagccgcgatgcggtg
ccggatctggtgctggtgaaccccccacggcgtgggatcggggtggcgctgtgcgaatac
ctgtcgcggatggcgccggagtatattttgtactccagctgcaatgcggtcagtatgcag
gccgatgtagcgcgcttgacggccaatggccagtatcagctgttgcaaatgcagctgttc
gatatgttcccgcacaccgcgcactatgaggtgctggggctgttgaagaaatctgcctgt
taa
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