Pseudooceanicola spongiae: F3W81_05175
Help
Entry
F3W81_05175 CDS
T06866
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pshq
Pseudooceanicola spongiae
Pathway
pshq03030
DNA replication
pshq03410
Base excision repair
pshq03420
Nucleotide excision repair
pshq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pshq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F3W81_05175 (ligA)
03410 Base excision repair
F3W81_05175 (ligA)
03420 Nucleotide excision repair
F3W81_05175 (ligA)
03430 Mismatch repair
F3W81_05175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pshq03032
]
F3W81_05175 (ligA)
03400 DNA repair and recombination proteins [BR:
pshq03400
]
F3W81_05175 (ligA)
Enzymes [BR:
pshq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F3W81_05175 (ligA)
DNA replication proteins [BR:
pshq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F3W81_05175 (ligA)
DNA repair and recombination proteins [BR:
pshq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F3W81_05175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F3W81_05175 (ligA)
MMR (mismatch excision repair)
DNA ligase
F3W81_05175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F3W81_05175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
QOL80266
UniProt:
A0A7L9WLK4
LinkDB
All DBs
Position
complement(1102365..1104512)
Genome browser
AA seq
715 aa
AA seq
DB search
MAAHQEPTSDTSEDLTPEAMTEAQAEKALADLALILGQANLSYHQEDRPDISDAEYDRLK
RRNAEIEAQFPDLKRDDSPSDQVGAAPADGFGKIRHEQRMLSLSNAFSDEDITDFDQRIR
RYLNLASDAALVFTAEPKIDGLSLSLLYENGKLVRAATRGDGEVGENVTANALTINDIPS
ELHGAPSRMEVRGEVYMSHEDFQSLNIRQSELGAKTFANPRNAAAGSLRQLDPGITRARP
LRFFAYAWGVLSEPLAESQMDAIQRLQQLGFQTNPLTALCDGPTEMVAHYRGIEAQRATL
GYDIDGVVYKVNDLGLQARLGFRSTTPRWAIAHKFPAELAWTTLEAIDIQVGRTGALSPV
ARLLPVTVGGVVVSNATLHNEDYIAGRDSKGEQIREGKDIRIGDWVQIYRAGDVIPKIAN
VDLSKRSPDAPVFQFPMTCPECNSDAIREPGDAVRRCSGGLICPAQAVEKLKHFVSRGAF
DIEGLGAKQVEQFYRDDWIREPADIFLLRDKYGAGLQQLKNREGWGEKSAANLFDGIDIS
RKVGLDKLLFALGIRHLGEAASRLIAQHYGTWQALEEGVLAAQEPGEAWDELLGIDGVGT
VMATSLVATFAQEAERASIDRLIAQLDVQAIRPPDTSDSPVAGKTVVFTGTLEKMTRSEA
KARAEALGAKVAGSVSAKTDILVAGPGAGSKAKKAADLGIETMDEDGWLALIGDA
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcatcaggaacccacatcagacacctctgaggatctgaccccggaggcaatg
accgaggcgcaagccgaaaaggccctcgctgatctcgctttgatcctgggtcaggcgaat
ctctcctatcatcaggaagacaggccggacatttcagacgccgagtatgatcgcctcaag
cgccggaatgcggaaatcgaggctcagtttccggacctgaaacgcgacgacagtcccagt
gatcaggtgggggccgcgccggctgacgggtttggcaaaatccggcatgaacagcggatg
ctatccctctccaacgctttttctgatgaggatatcactgactttgatcaacgcatccgt
cgctatctgaatctggcatcggatgccgcgctggtcttcactgcggagccaaagatcgac
gggctgagcctgtcattgctctacgaaaatggcaaactggtgcgtgcggccacccggggt
gatggcgaggttggcgaaaacgtgacggcaaatgcgctgacaatcaacgatatccccagt
gagttgcacggtgcgccgtctcgcatggaagtgcggggcgaagtctacatgagccacgag
gactttcagtcgctcaacatccggcaaagcgaattaggcgccaagaccttcgccaatccg
cgcaacgcggcagccggatcgttacgccagctagatcccggcatcacacgcgcgcggcct
ttgcgcttttttgcctatgcctggggcgtgctgtcggagcctctggcggagagccagatg
gacgcgatccagcgtctgcaacagctcggcttccagaccaacccactgacggcgctctgt
gacggccctacagaaatggtggcccactatcgcgggatcgaggcgcagcgcgccacgctt
ggttatgatatcgacggcgtcgtctacaaggtgaacgaccttggcttgcaggcaaggctg
ggctttcgttcgacgacgccccgttgggccattgcgcataagtttcccgctgaactcgct
tggaccacgcttgaggcaattgacattcaggtggggcgcactggtgctctcagcccggtt
gcgcggcttcttccggtgacagtcggcggggttgtcgtctccaacgcgacgctgcacaac
gaggattatattgccggtcgcgacagcaagggcgagcagatccgcgaaggaaaagacatc
cgcattggcgattgggtgcagatttaccgtgcaggtgatgtgatcccgaagatcgccaat
gtggatctctccaaacgtagcccagatgcgcccgtttttcagttccccatgacctgcccg
gagtgtaactcggacgcgatccgagagcctggcgatgctgtgcgccgctgtagtggtggc
ctgatctgtccggcgcaggcggttgaaaagctgaagcattttgtttcgcgtggtgccttt
gacatcgaggggctcggcgccaagcaggttgagcaattctatcgtgacgactggatccgc
gagcccgccgatattttcctgctgcgcgacaaatatggagcgggcctccagcagttgaaa
aatcgcgaaggctggggcgaaaaaagcgccgccaatcttttcgacggcatcgacatcagc
cgcaaggttggactcgacaagctgctctttgctcttggtatccggcatcttggggaggcg
gcctcgcggctgattgcccagcactacggtacctggcaggcgctggaggagggtgttctg
gctgcgcaggaaccgggtgaggcctgggacgaactgctgggtatcgacggcgtcggcaca
gtcatggcgacatcgcttgtggcgaccttcgcgcaggaggctgaacgtgcgtctatcgac
cgcctgatcgcgcagcttgacgtgcaagcgatcaggccgcccgacaccagcgatagtccc
gtcgcaggcaagaccgtggtattcaccggcactttggaaaagatgacgcggtctgaggcg
aaagcccgcgccgaagcccttggtgccaaggtcgcaggctcggtctcggccaagacggat
attctggtcgcaggtccgggtgccggctcaaaggccaagaaggccgctgacctcgggatt
gagaccatggacgaagatggctggctggctctgattggcgacgcatga
DBGET
integrated database retrieval system
