Providencia stuartii MRSN 2154: S70_09015
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Entry
S70_09015 CDS
T02042
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psi
Providencia stuartii MRSN 2154
Pathway
psi03030
DNA replication
psi03410
Base excision repair
psi03420
Nucleotide excision repair
psi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
S70_09015 (ligB)
03410 Base excision repair
S70_09015 (ligB)
03420 Nucleotide excision repair
S70_09015 (ligB)
03430 Mismatch repair
S70_09015 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psi03032
]
S70_09015 (ligB)
03400 DNA repair and recombination proteins [BR:
psi03400
]
S70_09015 (ligB)
Enzymes [BR:
psi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
S70_09015 (ligB)
DNA replication proteins [BR:
psi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
S70_09015 (ligB)
DNA repair and recombination proteins [BR:
psi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
S70_09015 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
S70_09015 (ligB)
MMR (mismatch excision repair)
DNA ligase
S70_09015 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
S70_09015 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFH93664
UniProt:
A0A140NIT2
LinkDB
All DBs
Position
complement(1928177..1929682)
Genome browser
AA seq
501 aa
AA seq
DB search
MQKGFVQEKRGRAAQYVFVVLSFYCSYVSADATRLFYPHQCSTLSQDELKKESQKLGEQL
QQWNRLYRLSGNSPVTDETYDQLLNTWQQWQKCQNLSGQLPPIHLPPHSRTVKHPIVHTG
LKKLNEVDIGKWIDTREEVWLQPKVDGVAISLVYQQGKLVSMISRGNGIEGLEWRDKADF
IPAIPKQLPTSQPQLILQGELFWRLKDHRQQASGGVNARNQVAGWLMRKSKPVTPEANID
VFIWAWPEGVGKAEEQWRQLANLGFPLTQQYSHKVTTMAQVKKWQSYYYQQPMPFATDGI
VLKSFPTPRVAAWQVNHNSWSVAWKHPYARIASKVTDLHFRVGRTGAVSVVAEIEPVELD
SKKVSRLYLGSLKSWQKKDLLVGDTIQVALAGHGIPKLESVIWRLQQRTYPDLSQFKQFH
ALSCFVMTPQCEQQFVARLNWLGKQLKIKGISEATWREWAEHYHLNKLTTWLSPSWQTSL
PNTKKPRKSLSNLGWWGSNHS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagggatttgttcaggaaaaaagagggcgggctgctcaatacgtctttgtggta
ctgagtttttactgtagctatgtgtcagccgatgcaacacggcttttttatccccaccaa
tgctcaacattgagtcaggatgagttaaaaaaagagagccaaaaattgggtgagcaattg
cagcaatggaaccgtctataccgtttatcggggaatagccccgtaacagatgaaacatat
gatcaactgctgaatacatggcaacaatggcaaaagtgccaaaatttgtctgggcaatta
ccgcctatccatttgccacctcattcgcgcacagtcaagcatcctattgtgcatacgggc
ttaaaaaaattaaatgaagtggatattggaaaatggatagatacacgggaggaggtctgg
ctacaaccgaaggttgatggcgttgccatttcgttggtttatcaacaagggaaattggtt
tcaatgatcagtcgtggaaatggtattgaggggcttgaatggcgtgataaggcggatttt
attccagctatccccaagcaactaccgacatcacaaccacagcttatattacaaggagag
ctattttggcggctaaaagatcataggcaacaagccagtggtggggttaatgccagaaat
caagttgcagggtggttaatgcgcaaaagtaagcctgtaacccctgaggccaatattgat
gtctttatttgggcatggccagagggagtggggaaagccgaagagcaatggcggcaactg
gcaaatttagggtttccacttactcagcaatatagccataaagtcacgactatggcacaa
gtgaaaaaatggcagtcctattactatcaacagccgatgccttttgcgacagacggtatt
gtacttaagtcatttccaacgccacgggtagcggcatggcaagtgaatcacaacagttgg
tctgtagcttggaagcatccttatgctcgaatcgcctcaaaagtgactgacctccatttt
cgcgtggggagaacgggggctgtgagtgtggtggcggaaattgaacctgttgaactagat
agtaaaaaggtgagtcggctctatttaggctcattgaaatcatggcagaaaaaggatctg
ctggttggtgatactattcaagtggcactagcggggcatggtattccaaaacttgaatcg
gtaatttggcgccttcaacaacgcacctaccctgacttatctcagtttaagcagtttcac
gctttaagctgttttgtaatgactcctcagtgtgagcagcagtttgttgctcgtttaaat
tggctaggcaagcaattgaagataaaaggaattagtgaagctacttggcgtgaatgggca
gaacattaccatctgaataagctgacaacatggttatctccaagttggcaaaccagtcta
cccaatactaaaaaaccaagaaaatcattgagcaatttaggctggtggggcagcaaccac
tcatga
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