Pengzhenrongella sicca: J4E96_15385
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Entry
J4E96_15385 CDS
T07613
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psic
Pengzhenrongella sicca
Pathway
psic03030
DNA replication
psic03410
Base excision repair
psic03420
Nucleotide excision repair
psic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4E96_15385 (ligA)
03410 Base excision repair
J4E96_15385 (ligA)
03420 Nucleotide excision repair
J4E96_15385 (ligA)
03430 Mismatch repair
J4E96_15385 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psic03032
]
J4E96_15385 (ligA)
03400 DNA repair and recombination proteins [BR:
psic03400
]
J4E96_15385 (ligA)
Enzymes [BR:
psic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J4E96_15385 (ligA)
DNA replication proteins [BR:
psic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J4E96_15385 (ligA)
DNA repair and recombination proteins [BR:
psic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J4E96_15385 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J4E96_15385 (ligA)
MMR (mismatch excision repair)
DNA ligase
J4E96_15385 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J4E96_15385 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
DUF1293
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QTE31559
UniProt:
A0A8A4ZKS9
LinkDB
All DBs
Position
complement(3347992..3350280)
Genome browser
AA seq
762 aa
AA seq
DB search
MTCVSQQPTEQPTDLSVPGPADEDLDEDLDVGLEPDAPRRRWAELAERIRDHQFAYYVRD
APTVSDGEYDVLLRRLGALEERYAELGLRTPESPTQLVGGTFSTEFTAVDHLERMLSLDN
AFSADDVAAWAERVQSGLDGAAADTHYLCELKIDGLAIALLYRGGRLVRAATRGDGRTGE
DVTNNVKTIRGIPHTLGGTNHPEEIEIRGEVFLPVEGFEALNAAQVAAGKAPFANPRNSA
AGSLRQKDPRVTAGRPLQMLAHGIGAVRWPAGAPPLERQSQAYDLLAGWGIPVSTHSRVV
SDLAGVTEMIEYYRVHRHDVEHELDGIVIKVDELDLQRRLGATSRAPRWAIAFKYPPEEV
NTTLLDIRVNVGRTGRVTPYGVMEPTLVAGSTVAMATLHNASEVKRKGVLIGDTVVLRKA
GDVIPEIVGPVVELRDGTEREFVMPTHCPSCGTLLAPSKEGDADLRCPNTRSCPSQLRER
LSHVAGRGAFDIEALGWEGASALLEAGVVADEGDLFALDADKLRRVPLFVLSAKSKVKGR
AREAGDLNAVGESLLANLDKAKKETALWRVIVALSIRHVGPTAARALATEFGSLERIRQA
ATGDDPEALGGVEGVGPTIAAALRDWFEQPGEDEKWHVRIVDKWEAAGVRLADVRDASVP
RTLEGVTVVVTGSLAGYSRDGAKEAIIARGGKAAGTVSKKTDFVVVGENAGSKEAKAREL
GLTVLDEAGFTRLLAEGPGSAAPADAVDVYAADVAPEAAARV
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgacctgcgtgagccagcagccgaccgagcagccgaccgacctgagcgttcccggcccc
gccgacgaggacctcgacgaggacctcgacgtcggcctcgaacccgacgccccccggcgc
cggtgggccgagctcgccgagcggatccgcgaccaccagttcgcctactacgtgcgcgac
gccccgacggtcagcgacggcgagtacgacgtgctgctgcggcgcctcggtgcgctcgag
gagcggtacgccgagctcgggctgcgcacgcccgaatcgcccacccagctcgtcggcggg
acgttctcgaccgagttcacggccgtggatcacctcgagcggatgctctcgctcgacaac
gccttctcggccgacgacgtcgcggcgtgggccgagcgcgtgcagtccgggctggacggc
gccgcggccgacacgcactacctgtgcgagctgaagatcgacgggctcgcgatcgcgctg
ctgtaccgcggcggccggctcgtgcgcgccgcgacccgcggcgacgggcgcacgggcgag
gacgtgacgaacaacgtcaagaccatccgcggcatcccgcacacgctcggcggcacgaac
caccccgaggagatcgagatccgcggcgaggtcttcctgcccgtcgagggcttcgaggcg
ctgaacgccgcgcaggtcgccgcgggcaaggcgccgttcgccaacccgcgcaactccgcg
gccggctcgctgcggcagaaggacccgcgggtcacagccggccggccgctgcagatgctg
gcgcacggcatcggcgccgtgcggtggcccgccggcgcgccgccgctggagcgccagtcg
caggcctacgacctgctcgcgggctggggcatcccggtctcgacgcactcgcgggtcgtg
tccgacctcgcgggcgtgaccgagatgatcgagtactaccgggtgcaccgccacgacgtc
gagcacgagctcgacggcatcgtcatcaaggtcgacgagctcgacctgcagcgccggctc
ggcgcgacgagccgcgcgccgcggtgggcgatcgcgttcaagtacccgccggaggaggtc
aacaccacgctgctggacatccgggtcaacgtcggccgcaccgggcgcgtgactccgtac
ggcgtcatggagcccacgctcgtcgccgggtcgacggtggccatggcgacgctgcacaac
gcgagcgaggtcaagcgcaagggcgtgctgatcggcgacaccgtcgtgctgcgcaaggcg
ggtgacgtgatcccggagatcgtcggcccggtcgtcgagctgcgcgacggcaccgagcgc
gagttcgtcatgccgacgcactgcccctcgtgcgggacgttgctggccccgtcgaaggag
ggcgacgccgacctgcgctgccccaacactcggtcctgcccgtcgcagttgcgcgagcgg
ctctcgcacgtcgccgggcgcggggccttcgacatcgaggccctcggctgggagggcgcg
agcgcgctgctcgaggccggggtggtcgccgacgagggcgatctgttcgcgctcgacgcc
gacaagcttcggcgcgtgccgctgttcgtgctgtcggcgaagtccaaggtcaagggccgc
gcccgcgaggccggtgacctcaacgccgtcggcgagagcctgctcgcgaacctggacaag
gccaagaaggagaccgcgctctggcgcgtgatcgtcgcgctgtcgatccggcacgtgggc
ccgacggcggcgcgcgcgctcgcgacggagtttggctcgctcgagcgcatcaggcaggcc
gcgaccggcgacgacccggaggcgctcggcggcgtcgagggcgtcgggccgacgatcgcg
gcagcgctgcgggactggttcgagcagcccggcgaggacgagaagtggcacgtccgcatc
gtggacaagtgggaggccgccggggttcgcctggccgacgtgcgcgacgcgtcggtgccc
cgcacgctcgagggggtcaccgtcgtcgtcaccgggtcgctggccggctactcgcgcgac
ggcgcgaaggaggcgatcatcgcgcgcggcggcaaggccgcgggcacggtgtcgaagaag
acggacttcgtcgtcgtcggcgagaacgcggggtccaaggaggccaaggcccgcgagctc
ggcctgacggtgctcgacgaggcggggttcacgcggctgctcgccgagggtcccgggagc
gctgcccctgcggatgccgtggacgtgtacgccgcggacgtcgccccggaggcggccgcg
cgtgtctga
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