Pseudomonas sichuanensis: LOY51_24640
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Entry
LOY51_24640 CDS
T08582
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psih
Pseudomonas sichuanensis
Pathway
psih03030
DNA replication
psih03410
Base excision repair
psih03420
Nucleotide excision repair
psih03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOY51_24640 (ligB)
03410 Base excision repair
LOY51_24640 (ligB)
03420 Nucleotide excision repair
LOY51_24640 (ligB)
03430 Mismatch repair
LOY51_24640 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psih03032
]
LOY51_24640 (ligB)
03400 DNA repair and recombination proteins [BR:
psih03400
]
LOY51_24640 (ligB)
Enzymes [BR:
psih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LOY51_24640 (ligB)
DNA replication proteins [BR:
psih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LOY51_24640 (ligB)
DNA repair and recombination proteins [BR:
psih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LOY51_24640 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOY51_24640 (ligB)
MMR (mismatch excision repair)
DNA ligase
LOY51_24640 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LOY51_24640 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
HHH_5
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UVL88904
LinkDB
All DBs
Position
5487271..5488941
Genome browser
AA seq
556 aa
AA seq
DB search
MSLRMLFVLLYAYLAPANAEPCPDWNTTRARTEVAHLRQTLAHWDDHYHRQGIALVADEL
YDQSRQQLLTLQTCFNLPGSDNPLASARGPIPHPVPHIGVDKLADEQAVHNWLLGKKDVW
IQPKIDGVAVSLIFRQGRLSQLLSRGDGTQGHDWSRHIPRLNGVLHELPQPLDTVFQGEL
YWRLEGHVQAEAGSANARGTVAGLLARKQLSDAQGAGIGLFVWDWPTGPDTQAERLAQLA
TLGFADSLRHSVAISTFEEAAHWRQHWYRTALPFATDGVILRQDSRPPAERWQARTPYWI
AAWKYPFRQALAQVRGVHFRIGRTGRITPLLQLEPLRLDDRQISQLSLGSLARWQQLDIR
PGDQVAVSLAGLTIPRLESVVHRSPQRTPVIAPDPAEHHALSCWQASEGCQQQFLARLAW
LSGKQGLDMPGTGPGTWQRLIDSGRLTTLADWLDLDRHTLATLPGIAQARADHLQHAFAQ
ARQQPFERWLRALGVPAPAALKLGHDWSTLASRNIEQWLAEPGIGPGRATQLRGFFNHEQ
VQALALQLRQHAIEGF
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcaggatgttgtttgttctgctgtacgcctacctcgccccggccaatgccgag
ccctgccccgactggaacacaacgcgcgcccgtactgaagtcgcccacctgcgccagacc
ttggcccactgggacgaccactatcaccgccagggcattgcccttgtggcggacgagctc
tatgaccagagccgccagcaactactgaccctgcaaacctgtttcaacctgccaggcagt
gacaacccgctggccagcgcacgcggtccgatcccccatcctgtgccgcatatcggcgtc
gacaagctggccgacgagcaggctgtgcacaactggttattgggcaagaaagacgtatgg
atacaacccaagatcgatggcgtggccgtgtcgctgatctttcgccagggccggttaagc
cagctgctcagccgcggcgatggcacccaggggcatgactggagccggcacatcccccgt
ttgaacggcgtcctgcacgagctgccacagccgctggacacggtattccaaggcgagctg
tactggcgcctcgaaggccatgtgcaggcagaggccggcagcgccaacgcgcgcggcacc
gttgccgggttgctggcgcgcaagcaactgagcgatgcgcagggcgccggtatcggcctg
ttcgtctgggactggccgaccggcccggacacccaggccgaacgcctggcgcagctcgca
acgctggggtttgccgacagcctgcgccacagcgtggcgatcagcacctttgaggaggcc
gcacactggcgccagcactggtatcgcactgccctgcccttcgccaccgatggcgtgatc
ctgcgccaggacagccggccaccggccgagcgctggcaagcccgcacgccctactggatc
gccgcctggaagtacccgttcaggcaggcgctggcacaggtacgcggggtgcattttcgc
atcggccgcaccgggcgcatcaccccgctgctgcagctcgaaccgctgcgcctggatgac
cggcaaatcagccagctcagcctgggctcgctggcgcgctggcagcaactggacattcgc
ccgggcgaccaagtggcggtgagcctggcgggcttgaccattccacgcctggaaagcgtg
gtgcatcgcagcccacagcgcacaccggtaatcgcgccagacccggcagagcaccacgcc
ctgagctgctggcaggccagcgagggttgccagcaacagtttcttgcccggctggcctgg
ctcagcggcaagcaggggctggacatgcctggcacggggcccggcacctggcagcggctg
atcgacagcgggcgactcacgaccctggccgactggctggacctcgaccgccacaccctg
gcgaccctgcccggcattgcccaggcccgcgccgaccacttgcaacacgccttcgcccaa
gctcgccaacagccgttcgaacgctggctacgcgctctcggcgtacccgccccggccgcc
ctcaagcttgggcacgactggtccaccctggcctccagaaacattgagcaatggcttgcc
gagccaggcatcggccctggtcgggccacgcaattgcgtggctttttcaaccatgagcag
gtacaggccctggccctgcaactgcgacaacatgcaatcgagggtttctaa
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