Pseudomonas siliginis: NF676_25240
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Entry
NF676_25240 CDS
T08569
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psii
Pseudomonas siliginis
Pathway
psii03030
DNA replication
psii03410
Base excision repair
psii03420
Nucleotide excision repair
psii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NF676_25240 (ligB)
03410 Base excision repair
NF676_25240 (ligB)
03420 Nucleotide excision repair
NF676_25240 (ligB)
03430 Mismatch repair
NF676_25240 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psii03032
]
NF676_25240 (ligB)
03400 DNA repair and recombination proteins [BR:
psii03400
]
NF676_25240 (ligB)
Enzymes [BR:
psii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NF676_25240 (ligB)
DNA replication proteins [BR:
psii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NF676_25240 (ligB)
DNA repair and recombination proteins [BR:
psii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NF676_25240 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NF676_25240 (ligB)
MMR (mismatch excision repair)
DNA ligase
NF676_25240 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NF676_25240 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
HHH_5
DUF3701
Motif
Other DBs
NCBI-ProteinID:
UST79410
LinkDB
All DBs
Position
5489933..5491609
Genome browser
AA seq
558 aa
AA seq
DB search
MLFTLRLLLAFLLALITLVSQANCPNWDLSQAQREITSLQNRIDQWDDAYHREGRSLISD
ELYDQSRLRLKEWQACFNQPTSPQPLRTASGTVTHPIAHTGLDKLHKVEDVAHWLRDRQN
VWVQPKVDGVAVTLIYRQGVLQQAISRGDGVNGQDWTASARRIAAIPQRLRQPRDLLVQG
ELYWRLSAHVQSQSGSVNARATVAGLMGRKTLDVEQAAGIGLFVWDWPQGPVRLPERLSE
LQTLGFATTEPYTQPVTRFEDAQKWREHWYRSPLPFASDGVVLRQSQRPPAERWQARAPY
WAIAWKYPFAQALAEVRKVNFKIGRTGRITPVLELLPVRLDDREIKRVSVSSLKRWQTLD
IRPGDQVAISLAGLTIPRLDSVVLRTSERADINIPDAGDYHALSCWQPTPGCESQFLARL
TWLSGKQGLAMQHVGRGTWEKLLETGRLKHLLDWLTLDASELANIAGLGERSSARLIDSF
QGARQQPFARWLKALGMPPTGQAQLDDSWQALAQRDTEQWQAEAGIGPGRAAQLSAFFRD
PQVLALSDTLKAAGIDGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgctcttcacactgcgcctgttgctggccttcctgctggcactcatcacccttgtcagc
caagccaactgtccgaactgggatctttcccaagcccaacgcgaaatcaccagcctgcaa
aaccggatcgaccaatgggacgacgcctatcaccgcgaaggccgttcattgatcagcgac
gaactctatgaccagtcccgactgcggctgaaagaatggcaagcctgtttcaaccaaccc
acatccccgcagccgttgcgcaccgcgtccggcacggtcacccaccccatcgcccacacc
ggcctggacaagctgcacaaagtcgaagacgtcgcccactggttgcgtgatcgccagaac
gtctgggtgcaacccaaggtcgacggcgtggctgtcacgctgatctaccgccagggggta
ttgcagcaggcgatcagtcgcggtgatggggtcaacggccaggactggacagcctccgcg
cgcaggattgcagccattccgcaacgattgaggcagccacgggatctgctggtacagggc
gaactctattggcgcctgagcgcgcatgttcaatcacagtccggcagcgtcaatgcccgc
gccaccgtcgccgggctgatgggacgtaaaacactcgatgttgaacaggccgccgggatc
ggcctgtttgtctgggactggccgcaaggtcctgtgcggctgccggaaagattgtccgaa
cttcagacattggggttcgccacaaccgagccctatacccagcccgtcacccgattcgaa
gacgcgcaaaaatggcgcgagcactggtatcgctcgccactgccctttgccagcgacggc
gtggtgctgcgtcagagccaacggccacccgccgaacgctggcaggctcgcgcgccgtat
tgggcgattgcctggaaatacccgttcgcccaggcattggccgaagtgcgcaaggtcaac
ttcaaaatcggccgcaccgggcggatcacgccggtgctggaactgctgccggtcagactc
gatgaccgcgaaatcaaacgggtcagcgtcagctcgctcaagcgctggcaaaccctcgac
atccgccccggcgatcaggtggcaatcagtctggccgggctgaccattccgcgcctcgac
agtgtcgtgctgcgcaccagcgaacgggcggacatcaacatccccgatgctggcgactac
cacgccctgagctgctggcaaccgacgccggggtgtgaaagccagtttctcgcgcgtctt
acctggctcagtggcaagcagggcctggccatgcagcatgtcggtcgcggcacttgggag
aaacttttggaaacaggccgtctgaaacacctgctggattggctgaccctcgatgcgtca
gagcttgctaacattgccggcctcggcgagcgcagcagcgcacggctgatcgacagtttt
cagggcgcgcggcaacagccgttcgctcgatggttgaaagcgctgggcatgccgccgacc
ggacaggcacaactggacgattcgtggcaggccctggcacaacgcgacactgaacaatgg
caggcagaagccggtatcggcccgggacgcgcggcgcaactgagcgcattctttcgcgac
ccgcaggtactggctttgagtgacaccctgaaagccgccggaatcgacggcttctga
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