Phocoena sinus (vaquita): 116738772
Help
Entry
116738772 CDS
T07759
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116738772 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116738772 (SMCHD1)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
116738772 (SMCHD1)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
116738772 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
OpuAC
Motif
Other DBs
NCBI-GeneID:
116738772
NCBI-ProteinID:
XP_032458385
Ensembl:
ENSPSNG00000010317
UniProt:
A0A8C9BTL4
LinkDB
All DBs
Position
14:54332580..54462590
Genome browser
AA seq
2000 aa
AA seq
DB search
MAAADDGGPSVGTGEGDGGDGGDGYRTVYLFDRREKESELGDRALQVTERSDFAAFRASV
CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVSQLLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGVRRIQIKLHFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN
DDERFLHHLISEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGN
EKRTSKEVGPFNNIDIEISVFEKGKTPKIINLREIQDDMQTLYINTAADSFEFKAHVEGD
GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYS
AIEWDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDE
IKTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPNGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFLCGLLDLPFRVGVP
FNIPLQFQDEFGHTSQLSTDIQPVFEASGLSLHYEEITNGPNCVIRGVTAKGPVNSCQGK
NFNLKVIFPGLKEDSQFLKITLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNI
TAQPKLIVHCKFSGAPNLPLYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKD
VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE
IHLTSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT
VRPLPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSSLGIAGIG
LDSSHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLV
DWPELKESIPVINGRELQNPLIVQLCDQWDNLALVPQVKISLIKANNLKLTPSNQQHKTD
ERGRANLGVFSVYAPRGEHIMQVKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDAS
FLAGGIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAEIFSCNKIKDND
KEDGCFYFRDKAIPNKVGPYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPEIQPATP
AVSNVRSVASRTLVKDLYLRITDDYNNHTGIDLVGTVTATIKGSNEEDDTPLFIGKVRTL
EFPFVKGSAEITSLVLAENSPGRDSTEYFIVFEPQLPGLSRTLESYILPFMFYNDVKKQQ
QMAALTKEKDQLSKSIIMYRSLFDASKQLLDEMKCQVEEAKLKEAQLRNELKTHNIDIPT
TQQMPHIEALLKKKISEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVI
SWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRALPHYRNGKLYF
KPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLT
RDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRTAVCRLGS
VNKDLNGQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSPRHPMTDCPVP
PKRMRREVTRQNRIITKTDV
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggacgacggcgggccctcggtggggaccggagagggcgacggaggcgac
ggcggcgacggctacaggacggtgtacttgtttgaccggcgcgagaaggagtcggagctc
ggggaccgggcgctgcaggtcacggagcgctcggactttgcggcgttccgtgcttcagtg
tgtcagacacttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaa
gaaattacctgtgataattttgatgaaactgttaaagatggagtcactctgtacctgcta
cagtcagtcagtcagttactactaacagctacaaaagaacgaattgacttcctacctcac
tatgacacattggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcct
ttaccatttgctcttgcagaattaattgataattcattgtctgccacgtctcgtaacact
ggtgttagaagaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgtt
gcagtgatagataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtat
aggttgtcaaaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcga
ccactaccagtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaag
caggctgttttctttgttggacaatcagccagaatgataagcaaacctgcagattcccag
gatgttcatgaacttgtactttctaaagaagattttgagaagaaggagaaaaataaagag
gcaatatatagcggatatattagaaacagaaagccgtctgattctgttcacattacaaat
gatgatgaaagatttctacatcatcttatctcagaggagaaggaaaaagatagctttact
gctgtggttatcacaggggtacaaccagaacacatacagtacttgaaaaattatttcctt
ctttggacgagacagttagcgcatatttatcattactatattcatggcccaaaagggaat
gaaaaacgtacatcaaaggaagttggacctttcaacaacattgatattgaaatttctgtg
tttgaaaaggggaagacacctaagattatcaacctaagggaaatacaagatgacatgcag
acgttgtatataaatacagcagccgatagttttgagttcaaggctcatgttgaaggagat
ggtgtagtggaagggattatccgatatcacccttttttatatgatagagaaacgtatcct
gatgatccatgctttccatcaaaattaaaagatgaagatgatgatgatgactgtttcata
cttgagaaagcagcaagagggaaaagacctatttttgaatgtttttggaatggacgacta
ataccatatacatctgttgaagactttgactggtgtactcctcctaagaagagagggctt
gcaccgattgagtgctacaataggatatctggtgcattattcactaatgacaaattccag
gtcagcacaaataaactgacctttatggatcttgagctaaaattgaaagataagaacacc
ctttttacaaggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgct
ttatggctgaaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaa
ggaataattacacgtcctgatcttccttctaaaaagcagggcccctgggcgacttattca
gcaatagaatgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagaca
cttcctctcttttatggaagcattgtaaaattttttctttatggtgatcatgatggagaa
gtatatgctacaggaggagaggttcaaattgcaatggaacctcaggcactgtatgatgaa
ataaaaactgtgccaattgcaaagctggataggacagttgctgagaaagctgtgaaaaaa
tatgtagaagatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaagga
gatgaattattgccaaatgagattaggcctgctggaacccccattggtgcattaagaatt
gaaatattgaataaaaagggggaagcaatgcaaaagcttccaggaacaagtcatggaggg
tcaaagaaactcctggttgagctcaaagttatactacactctccaaatggaaataaagaa
atcatttcacatattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aatattcaaaagttggggaattatacattgaaattacaagttgtactgaatgaaagtaat
gcagacacttatgcaggaagaccactaccatctaaagcaattaaattttctgtcaaagag
ggtaaaccagagaaatttttatgtggtcttttggatcttccttttcgtgttggagtccca
ttcaatatccctctgcagtttcaggatgaatttggtcatactagtcaactatcaactgat
attcagccagtttttgaagcaagtggtttatctttacattatgaagaaataaccaatggc
ccaaattgtgtcattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaag
aattttaatctgaaggttatttttccgggtttaaaagaagactcacagtttctgaaaatt
acattactgccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagtt
atagaaaatggaacagctttcccatttcaggtagaagttttggatgaatcagacaatata
acagcacaaccaaaattgattgttcattgtaagttttcaggtgctccaaaccttccactc
tatgttgtggattgcagtagttctggaaccagtattttgtcaggaccagcaattcaagtt
cagaatatcaaaaaagaccagacgcttaaagcaaaaattgaaatacctagttgtaaagat
gtggcacctgtggagaagactattaagttgcttcccagtagccatgttgcaagattacag
atattcagtgtagaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattgg
atagcaggagatattatgcataaccttatttttcaaatgtatgatgaaggagaaagagaa
atccacttaacatcagctttagcagagaaaattaaagttaactggactcctgagattaac
aaagagcacttactacagggtctgcttccggatgtacaagtaccaacatctgtaaaagat
atgcgctattgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttaca
gtaagaccacttcctgatgaacctaaacatctaaaatgtgaattaaaaggaggaaaaact
gtacagatgggccaagagcttcaaggagaaatagttataatagttacagatcagtatgga
aatcagattcaagcattttcaccaagttctctatcttccttgggaattgctgggattgga
cttgatagctcacatttgaaaactacttttcaggaaaatacacaaagtataagtgtgaga
ggcatcaaatttattccaggtccccctggaaataaggatctttgttttacgtggcgtgag
ttttctgactttattcgagtgcagctaatttctgggccaccagctaaacttctccttgta
gactggccagagttaaaggagtccattccagtgattaacggaagagaattacagaatcct
ctcattgttcaactttgtgatcagtgggataatctagcacttgtgccacaggttaaaata
agccttataaaagctaacaatttaaagctcactccttcaaaccaacagcataaaaccgat
gaaaggggcagggctaatttgggagtgttcagtgtttatgcccctagaggagaacatatt
atgcaggttaaagccatttataacaagaataccatagaaggacctataattaagttaatg
attcttccagaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcc
tttttagcagggggtattttcactgattttatgattactgttatttctgaagatgacagt
atcattaaaaatattaatccagcacgtatttccatgaaaatgtggaaactgtcaaacagt
gggaaccgaccaccagcaaatgcagaaatatttagttgtaataaaataaaggataatgac
aaggaagatggctgcttctacttcagggataaagcaattcctaacaaagtggggccatat
tgtatccagtttggttttatgatggataaagcaaatatccttaacagtgagcagattata
gtggatgttctacctaatcaacctgtgaagttagttcctgaaattcagcctgctacacca
gctgtttcaaatgttcgctcagttgccagtaggaccttggtcaaagatttatatcttcgt
atcacggatgactacaacaatcatactggaattgatttggttggcactgtaacggctacc
atcaaaggctctaatgaggaagatgacaccccactctttattgggaaagttagaacactt
gaatttccctttgtgaaaggttcagctgaaatcacgagtctagttctggcagaaaatagt
cctggaagggatagcactgagtattttattgtgtttgagcctcagctaccaggtttatca
agaacattagaatcatatatcctaccatttatgttttacaatgatgttaagaagcaacaa
caaatggcagcacttacaaaagaaaaggaccaattatctaagtctattataatgtataga
agtttatttgatgccagcaaacagcttcttgatgagatgaagtgccaagttgaagaagca
aaattaaaagaggcccagttgcgaaatgaactaaaaacacacaatattgacattcctaca
acacaacagatgccacacattgaagcacttttgaagaaaaagatatcagaacaggaagaa
ctaaagaaaaaacccagaagatcatgtactcttccaaactatactaaaggcagtggagat
gttttaggaaagattgcgcacctggcacaaattgaagatgatagagctgcaatggttatt
tcttggcatctggcaagtgacatggactgtgtggtcaccctgaccactgatgctgcacgt
cgtatctatgacgaaacccaaggtcgtcagcaggtgttgccccttgattctatttataag
aagactcttccagattggaaaagagctctgcctcattaccgaaatggaaaattgtatttt
aaacccattggagatcctgtctttgcccgagatttgttaacgtttccagataatgtagaa
cattgtgaaacagtgtttggtatgctgttaggagacaccattattttggataatttggat
gctgctaatcattatagaaaagaggttgttaaaattacacattgtcctacactgctgacc
agagatggagatcgcattcgaagtaatggaaagtttgggggccttcagaataaagctcct
ccaatggataaacttcggggaatggtctttggagctccagtaccaaaacagtgcctgatc
ttaggggaacaaatagatcttcttcagcagtaccgcactgctgtgtgcaggttgggcagt
gtgaacaaggaccttaacgggcagttggaataccttcacactccagatatgaagaagaaa
aaacaggaacttgatgaacaagagaagaatctcaaactgatagagcaaaaactaggtatg
actcccacacgtaagtgtaatgactcaccgcgtcatccaatgacagactgtccagttcct
cctaagagaatgagaagagaagttacaagacaaaataggattataaccaaaacagatgtg
tga
DBGET
integrated database retrieval system
