KEGG   Phocoena sinus (vaquita): 116738966
Entry
116738966         CDS       T07759                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03018  RNA degradation
psiu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116738966
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116738966
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psiu03019]
    116738966
   03041 Spliceosome [BR:psiu03041]
    116738966
Messenger RNA biogenesis [BR:psiu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116738966
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     116738966
Spliceosome [BR:psiu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    116738966
 Complex C
  U2 snRNP components
    116738966
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E DUF150_C
Other DBs
NCBI-GeneID: 116738966
NCBI-ProteinID: XP_032458834
Ensembl: ENSPSNG00000010182
UniProt: A0A8C9BYD6
LinkDB
Position
14:51412802..51413333
AA seq 102 aa
MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgacgtggaccagcaacaaactaccaacactgtagaagagcctctggatctc
atcaggctcagtctagatgaacgaatctatgtgaaaatgagaaatgacagagagcttcga
ggcaggttacatgcttatgatcagcatttaaatatgatattgggagatgtggaagaaact
gtgacaacgatagaaattgatgaagaaacatatgaagagatatataaatcaacaaaacgg
aatattccgatgctctttgtccggggagacggtgttgtgctagttgccccaccattgaga
gttggttga

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