Phocoena sinus (vaquita): 116745554
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Entry
116745554 CDS
T07759
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psiu04040
]
116745554 (SCN4A)
Ion channels [BR:
psiu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
116745554 (SCN4A)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
116745554
NCBI-ProteinID:
XP_032472252
Ensembl:
ENSPSNG00000018145
UniProt:
A0A8C9CH68
LinkDB
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Position
20:complement(44312740..44339797)
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AA seq
1817 aa
AA seq
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MATSSLPTVVPLGPESLRPFTRESQAAIERRVMEEEARQQRNKQMEIEEPEQKPCSDLEA
GKSLPLIYGDPPPEVIGIPLEELDPYYSDKKTFIVLNKGKAIFRFSATPALYVLSPFSTL
RRCAIKVLIHSLFSMFIMVTILTNCVFMTMSDPPSWSKHVEYTFTGIYTFESLIKILARG
FCIEDFTFLRDPWNWLDFSVIMMAYLTEFVDLGNISALRTFRVLRALKTITVIPGLKTIV
GALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVRWPPPFNDTNTTWYGNDTW
DGQESWASNSTFDWDAYINDEGNFYFLEGSNDALLCGNSSDAGRCPEGYECIKAGRNPNY
GYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVIIFLGSFYLINLILA
VVAMAYAEQNEATLAENQEKEEEFQQMLEKFKKQQEELGKAKAAQALEGREADEDPAHGK
DCNGSLDTSAGEKGPPRPSCSADSGISDAMEELEEAHQKCPPWWYKCSQKVLIWNCCTPW
MRFKNIVHLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEQFDRVLNVGNLVFTGIFTAE
MVLKLIAMDPYEYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWP
TLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIAADCSLPRWHM
HDFFHSFLIVFRILCGEWIETMWDCMEVAGQAMCLTVFLMVMVIGNLVVLNLFLALLLSS
FSADSLAASDEDGEMNNLQIAVTRIKWGVGFAKAFLVGLLHGKILSPKVIMLSLGGTGEA
GEAGEAGESVSEDEKKELPPEEDENKDLKKDNHILNHMGLADGPPRSIELDHLNFINNPY
LTIHVPIASEESDLEMPTEEETDTFSEPEDGKKPLQPLDGNSSVCSTADYKPPEEDPEEQ
AEESPEGEQPEECFTEACVQRFPCLYVDISQGRGKMWWTLRRACFKIVEHNWFETFIVFM
ILLSSGALAFEDIYIEQRRVIRTILEYADKVFTYIFIMEMLLKWVAYGFKVYFTNAWCWL
DFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSI
MNVLLVCLIFWLIFSIMGVNLFAGKFYYCVNTTTAGRFAISEVNNKSECESLMHTGQVRW
LNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREKEEQPQYEVNIYMYLYFVIFII
FGSFFTLNLFIGVIIDNFNQQKKKFGGKDLFMTEEQKKYYNAMKKLGSKKPQKPIPRPQN
KIQGMVYDLVTQQAFDITIMILICLNMVTMMVETDDQSQLKVDILYNVNMVFIIIFTGEC
TLKMLALRQYYFTIGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLFRVIRLARIGRVLR
LIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDMFNFE
TFGNSIICLFEITTSAGWDGLLSPILNSGPPDCDPALENPGTSVRGDCGNPSIGICFFCS
YIIISFLIVVNMYIAIILENFNVATEESSEPLGEDDFEMFYETWEKFDPDATQFIDYSRL
SDFVDTLQEPLRLAKPNKIKLITLDLPMVPGDKIHCLDILFALTKEVLGDSGEMDALKET
MEEKFMAANPSKVSYEPITTTLKRKHEEVCAVKIQRAYRRHLLQRSVKQASYMYRHHRDS
SGDAAPEKEGLIADTMSKMYGPENGNSGLQSKGEWRGSTWDPRPALGLLSIRPTDTALPP
APPPGQTVRPGVKESLV
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcatctctgcccacggtggtgcctctgggccctgagagcctgcgccccttc
acccgggagtcccaggcagccatagaacggcgggtgatggaggaggaggcccggcagcag
cggaacaagcagatggagattgaggagcccgagcagaagccgtgcagtgacctggaggct
ggcaagagcctgccccttatctatggggaccccccaccggaggtcattggcatccccctg
gaggaactggatccctactacagtgacaagaagaccttcatcgtgctcaacaagggcaag
gccatcttccgcttctctgccacacctgctctctacgtgctgagcccctttagcaccctc
agacgctgcgccatcaaggtgctcatccactcgctgttcagcatgttcatcatggtcacc
atcttgaccaactgcgtgttcatgaccatgagcgacccgccttcctggtctaagcatgtg
gagtacaccttcacggggatctacacctttgagtccctcatcaagatcctggcccgaggc
ttttgcatcgaagacttcacattcctccgggacccctggaactggctggacttcagcgtc
atcatgatggcgtacctgacggagtttgtggacttgggcaacatctcggccctgagaacc
ttccgggtgctgcgggccctgaaaaccatcacagtcatcccagggctgaagaccattgtg
ggagccctgatccagtcggtgaaaaagctgtcagatgtgatgatactcaccgtcttctgc
ctgagtgtctttgccctggtggggctgcagctcttcatgggaaacctgcggcagaagtgt
gtgcgctggcccccgcccttcaatgacaccaacaccacgtggtacggcaacgacacctgg
gatggccaggagagctgggccagcaactctacctttgactgggatgcctacatcaatgac
gaagggaacttctatttcctggaaggctccaatgacgccctgctctgtgggaacagcagc
gacgctgggcgctgccctgagggttatgagtgcatcaaggccggacggaaccccaactat
ggctacaccagctatgacaccttcagctgggccttcctggctctcttccgcctcatgaca
caggactattgggagaacctcttccagctgacccttcgagcagcgggcaagacctacatg
atcttcttcgtggtcatcattttcctgggctccttctacctcatcaacctgatcctggcg
gtggtggccatggcatacgctgagcagaacgaggccaccttggccgagaatcaggagaaa
gaagaagagtttcagcagatgctggagaaattcaaaaagcagcaggaagagctggggaag
gccaaggccgctcaggcgctggaaggcagggaggcagacgaggacccagcccacggcaaa
gactgcaacggcagcctggacacatcggcgggggagaaggggcccccaagacccagctgc
agcgcagacagcggcatctcagatgctatggaagagctggaagaggcccaccagaagtgc
ccaccatggtggtacaagtgttcccagaaagtgctcatatggaactgctgcaccccgtgg
atgaggttcaagaacatcgtccacttgatcgtcatggaccccttcgtggacctgggcatc
accatctgcattgtgctcaacaccctcttcatggccatggagcattaccccatgacggag
caatttgacagggtgctcaacgtgggcaacctggtcttcacgggcatcttcacagcagag
atggtgctgaagctcatcgccatggacccctatgagtacttccagcagggctggaacatc
ttcgacagtatcatcgtcaccctcagcctggtggaactgggcctggccaacgtgcagggg
ctgtcggtgctccgctccttccgtctgctgcgggtcttcaagctggccaagtcgtggcca
acgttgaacatgctcatcaagatcattggcaactcggtgggggcgctgggcaacctgacg
ctggtgctggccatcatcgtgttcatcttcgccgtggtgggcatgcagctgttcggcaag
agctacaaggagtgcgtgtgcaagatcgccgcggactgcagcctgccccggtggcacatg
cacgacttcttccactccttcctcatcgtcttccgcatcctgtgcggggagtggatcgag
accatgtgggactgcatggaggtggccggccaggccatgtgcctcaccgtcttcctcatg
gtcatggtcatcggcaacctggtggtcctgaacctcttcttggccctgctgctcagctcc
ttcagcgccgacagcctggcggcctcggacgaggatggcgagatgaacaacctgcagatc
gccgtcacgcgcatcaagtggggtgtcggcttcgccaaagccttcctcgtggggctgctg
catggcaagatcctgagccccaaggttatcatgctcagcctcggggggactggggaggct
ggcgaggccggcgaggctggggaaagtgtctcagaagatgagaagaaggagctaccgccc
gaggaggatgaaaacaaggacctcaagaaggacaatcatatcctgaaccacatgggcctg
gctgacggccctccccgcagcattgagctggaccacctcaacttcatcaacaacccctac
ctgaccatccacgtgcccatcgcctccgaggagtctgacctggagatgcccacagaggag
gaaacggacaccttctcggagcctgaggacggcaagaagccgctgcagcccctcgacgga
aactcctccgtctgcagcactgccgactacaagccccccgaggaggaccccgaggaacag
gccgaggagagccctgagggggagcagcctgaggagtgcttcaccgaggcctgtgtgcag
cgctttccctgcctctacgtggacatctcccagggccgagggaagatgtggtggaccctg
cgcagggcctgcttcaagatcgttgagcacaactggtttgagaccttcatcgtcttcatg
atcctgctcagcagtggagccttggccttcgaggacatctacatcgagcagcggagagtc
atccggaccatcctggaatacgcagacaaggtcttcacctacatcttcatcatggagatg
ctgctcaagtgggtggcctatggcttcaaggtgtacttcaccaacgcctggtgctggctc
gacttcctcatcgtggatgtctccatcatcagcctggtggccaactggctgggctactcg
gagctgggacccatcaaatccctgcggacactcagggctctgcgtcccctgagggcactg
tctcgattcgagggcatgagggtggtggtgaatgccctcctgggcgccatcccctccatc
atgaacgtgctgcttgtctgcctgatcttctggctcatcttcagcatcatgggcgtcaac
ctgtttgccggcaagttctactactgcgtgaacaccaccaccgccgggaggttcgccatc
tccgaggtcaacaacaagtccgagtgcgagagcctgatgcacacgggccaggtccgctgg
ctcaacgtcaaggtcaactacgacaacgtgggtctgggctacctctccctcctgcaggtg
gccaccttcaagggctggatggacatcatgtatgcagccgtggactcccgggagaaggag
gaacagccccagtacgaggtgaacatctacatgtacctctatttcgtcatcttcatcatc
ttcggctccttcttcaccctcaacctcttcattggcgtcatcatcgacaacttcaaccag
cagaagaagaagtttggagggaaagacctcttcatgacggaggaacagaagaaatactat
aacgccatgaagaagcttggctccaagaagcctcagaagccaattccccggccccagaac
aagatccagggcatggtgtacgacttggtgacgcagcaggcgttcgacatcacgattatg
atcctcatctgcctcaacatggtcaccatgatggtggagacggatgaccagagccagctc
aaagtggacatcctctacaacgtcaacatggtcttcatcatcatcttcacgggcgagtgc
acgctcaagatgttggccctgcgccagtactacttcaccatcggctggaacatcttcgac
tttgtggtcgtcatcctgtccattgtgggcctcgcactctctgacctgatccagaaatac
ttcgtgtcacccacgctgttccgtgtcatccgcctggcacggatcgggcgcgtcctacgg
ctgatccgaggggccaagggcatcaggacgctgctctttgctctcatgatgtcactgccc
gccctcttcaacatcggcctcctcctcttcctggtcatgttcatctactccatcttcggc
atgtccaacttcgcttacgtcaagaaggagtcgggcatcgacgacatgtttaacttcgag
accttcggcaacagtatcatctgcctctttgagatcaccacgtcagccggctgggacggg
cttctcagccccatcctcaacagcgggccccccgactgtgaccccgcgctggagaacccg
ggcaccagcgtcaggggcgactgcggcaacccctccatcggcatctgcttcttctgcagc
tacatcatcatctccttcctcatcgtggtcaacatgtacatcgccatcatcctggagaac
ttcaacgtggccacggaggagagcagcgagcctctcggggaggatgacttcgagatgttc
tacgagacgtgggagaagtttgaccccgacgccacgcagttcatcgactacagccgcctc
tccgacttcgtggacaccctgcaggagccgctgaggctcgccaagcccaacaagatcaag
ctcatcacactggacctgcccatggtgccaggggacaagatccactgcctggacatcctc
tttgccctgaccaaagaggtcctgggagactctggggagatggatgccctcaaggagacc
atggaggagaagttcatggctgccaacccatccaaggtctcctacgagcccatcacaacc
accctcaagaggaagcacgaggaagtgtgcgctgtcaagatccagagggcctaccgccgg
cacctgctgcagcgctccgtgaagcaggcttcctacatgtaccgccaccatcgggacagc
agcggggacgcagcacccgagaaggaggggctgattgctgacaccatgagcaagatgtat
ggccctgagaatgggaacagcggtttgcagagcaagggggagtggaggggctcgacatgg
gaccccagacctgccctggggctcctgtccatcagacccacagacacagccctccctccc
gccccacccccggggcagacggtgcgcccaggggtcaaagagtctcttgtctag
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integrated database retrieval system
