Phocoena sinus (vaquita): 116748587
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Entry
116748587 CDS
T07759
Symbol
THBS1
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-1
KO
K16857
thrombospondin 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04015
Rap1 signaling pathway
psiu04115
p53 signaling pathway
psiu04145
Phagosome
psiu04148
Efferocytosis
psiu04151
PI3K-Akt signaling pathway
psiu04350
TGF-beta signaling pathway
psiu04510
Focal adhesion
psiu04512
ECM-receptor interaction
psiu04820
Cytoskeleton in muscle cells
psiu05144
Malaria
psiu05165
Human papillomavirus infection
psiu05205
Proteoglycans in cancer
psiu05206
MicroRNAs in cancer
psiu05219
Bladder cancer
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04015 Rap1 signaling pathway
116748587 (THBS1)
04350 TGF-beta signaling pathway
116748587 (THBS1)
04151 PI3K-Akt signaling pathway
116748587 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116748587 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
116748587 (THBS1)
04148 Efferocytosis
116748587 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
116748587 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
116748587 (THBS1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116748587 (THBS1)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
116748587 (THBS1)
05205 Proteoglycans in cancer
116748587 (THBS1)
09162 Cancer: specific types
05219 Bladder cancer
116748587 (THBS1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
116748587 (THBS1)
09174 Infectious disease: parasitic
05144 Malaria
116748587 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116748587 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
psiu00536
]
116748587 (THBS1)
Membrane trafficking [BR:
psiu04131
]
Endocytosis
Phagocytosis
Opsonins
116748587 (THBS1)
Glycosaminoglycan binding proteins [BR:
psiu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116748587 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
TSP1_CFP_C
TSP1_ADAMTS
cEGF
Laminin_G_3
Laminin_G_2
EGF_3
TSP1_CCN
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
116748587
NCBI-ProteinID:
XP_032477611
Ensembl:
ENSPSNG00000003931
LinkDB
All DBs
Position
2:complement(94461670..94478434)
Genome browser
AA seq
1217 aa
AA seq
DB search
MGLAWGLSVLFLWHVCGSNRIPESGGDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFR
IEDANLIPPVPDDKFQDLVDAVRAEKGFLLLASLRQMKKTRGTLLAVERKDHSGQVFSVV
SNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELD
VPIQGIFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSSTSVLL
TLDNNVVNGSSPAIRTNYIGHKTKDLQAMCGISCDELSNMVLELRGLRTIVTTLQDSIRK
VTEENKELVNELRRPPLCYHNGVQYRNSEEWTVDSCTECRCQNSVTICKKVSCPIMXCSN
ATVPDGECCPRCWPSDSADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRCEGSSVQT
RTCHIQECDKRCKDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARET
KACQKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQIC
NKQDCPSVRNGSYWEAAETHYLPVSLVSDGCLSNPCFADVKCTSYPDGSWKCGACPPGYS
GNGIQCKDVDECKEVPDACFNHNGEHRCENTDPGYNCLPCPPRFTGSQPFGRGVERATTN
KQVCKPRNPCTDGTHDCNKNAKCNYLSHXQXPMYRCECKPGYAATXIICGEDTDLDGWPN
EDLVCVANATYHCKKDNCPNLPNSGQEDYDKDGIGDACDDDDDNDKIPDDRTNCPFHYNP
AQYDYDRDDVGDRCDNCPYNHNPDQADTDNNGEGDACAADIDGDGILNERDNCQYVYNVD
QRDTDMDGVGDQCDNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNA
NQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDACKDDFDQDNVP
DIDDICPENVDISETDFRRFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGY
DEFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSG
LSVKVVNSTTGPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGF
IRVVMYEGKKIMADSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRGRSKMTVNIPVD
IPSSDQYQERQSWERLI
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atggggctggcctggggactcagtgtcctgttcctgtggcatgtgtgcggctccaaccgc
attccagagtctgggggagacaacagcgtgtttgacatctttgaactcacgggggctgcc
cgcaagggttccgggcgccgactggtgaagggtcctgacccttccagcccagctttccgc
atcgaggatgccaacctgatcccccctgtgcctgacgacaagttccaagacctagtggat
gctgtgcgggcggagaaaggtttcctcctcctggcctccctgaggcaaatgaagaagacc
cggggcacgctgctggccgtggagcggaaagaccactccggccaggtcttcagcgtggtc
tccaatggcaaggcgggcaccctggacctgagcctgaccgtgcaggggaagcagcatgtg
gtgtcggtggaagaagcactcctggcgaccggccagtggaagagcatcaccctgtttgtg
caggaggacagggcccagctgtacatcgactgtgagaagatggagaatgctgagctggac
gttcccatccaaggcatcttcaccagggacctggcgagcatcgccaggctccgcatcgcc
aaaggaggtgtgaatgacaatttccagggcgtgctccagaatgtgagatttgtctttgga
accacaccagaagacatcctcaggaacaaaggctgctccagctctaccagcgtccttctc
acccttgacaacaatgtggtgaacggttccagccctgccatccgcaccaactacattggc
cacaagacaaaggatctgcaagccatgtgcggcatctcctgtgacgagctatccaacatg
gtcctggagcttaggggcctgcgcaccatcgtgaccacgctgcaggacagcatccgcaaa
gtgactgaagagaacaaagagctggtcaatgagctgaggaggcccccgctctgctaccac
aatggagtccagtacaggaatagcgaggagtggacggtggacagctgcaccgagtgtcgc
tgccagaactcagttaccatctgcaaaaaagtgtcctgcccaatcatgncctgctccaat
gccacagttcctgatggagaatgctgcccgcggtgttggcccagcgattctgcggacgat
ggctggtccccatggtctgagtggacctcttgctctgtaacgtgtggcaacggaatccag
cagcgtggccgctcctgcgacagcctcaacaacagatgcgagggctcctccgtgcagaca
cggacctgccacattcaggagtgtgacaagagatgtaaggatggcggctggagccactgg
tccccgtggtcgtcttgttctgtaacatgtggagacggtgtgatcacaagaatccggctg
tgcaactctcccagcccccagatgaatgggaagccatgtgagggcgaagctcgggagacc
aaagcctgccagaaagatgcctgccccatcaatggaggctggggaccctggtcaccatgg
gacatctgttccgtcacctgtggaggaggggtgcagaaacgtagtcggctctgcaacaac
cccacaccccagtttggaggcaaggactgcgttggtgatgtgacagaaaaccagatctgc
aacaagcaggactgtccatctgtccggaatggcagttactgggaagcagctgagacccac
tatttgcctgtctctcttgtctcagatggatgcctgtccaatccctgctttgcggacgtc
aagtgtaccagctaccctgacggcagctggaagtgtggtgcttgtcccccgggctacagc
ggaaatggcatccagtgcaaagatgttgatgagtgcaaagaagtccctgatgcctgcttc
aaccacaacggagagcacaggtgtgagaacacagaccccggctacaactgcctgccctgc
ccgccacgcttcaccggctcacagcccttcggtcggggcgtggaacgtgccaccaccaac
aaacaggtgtgcaagccccgcaacccctgcacggacggcacacacgactgcaacaagaat
gccaagtgcaactacctgagccactgacagtgacccatgtaccgctgcgagtgcaagcct
ggctacgcggcaacgnncatcatctgtggggaggacacagacctggacggctggcccaac
gaggacctggtgtgcgtggccaatgcaacttaccactgcaaaaaggataattgccccaac
cttcccaactcggggcaggaagactatgacaaggacggaatcggcgacgcctgtgacgat
gatgatgacaatgataaaattccagatgacaggacaaactgtccgttccattacaaccca
gcacagtatgactacgacagagacgacgtgggagaccgctgtgacaactgcccctacaac
cacaacccagaccaggctgacacggacaacaatggggaaggagacgcctgcgcagcagac
attgatggggacggtatcctcaatgaacgggacaactgccagtatgtctacaatgtggac
cagagagacactgacatggatggggttggagatcagtgtgacaactgccccctggaacac
aatccagatcagctcgattctgactcagaccgcattggagatacctgtgacaacaatcag
gacattgatgaagacggccaccagaacaacctggacaactgtccctacgtgcccaacgcc
aaccaggccgaccatgacaaggacggcaagggtgatgcctgcgaccatgacgatgacaat
gacggcattcctgatgacaaggacaactgcaggctcgtgcccaatcctgaccagaaggat
tctgatggtgatggtcgaggtgatgcttgcaaagatgattttgaccaggacaacgtgcca
gacatcgatgacatctgtcccgaaaacgttgatatcagtgagaccgatttccgccgattc
cagatgattcctctagatcccaaagggacgtcccaaaatgaccctaactgggttgtacgc
catcagggtaaagaactcgtccagactgtcaactgtgatcctggacttgctgtaggttat
gatgagtttaacgctgtggacttcagtggcaccttcttcatcaacaccgaaagggacgat
gactatgccggatttgtctttggctaccagtccagcagccgcttctacgttgtgatgtgg
aagcaagtcactcagtcctactgggacaccaaccccacaagggctcagggatactccggc
ctttctgtgaaggtcgtgaactccaccacagggcctggcgagcacctgcggaatgccctg
tggcacacaggaaacacccccggccaggtacgcacgctgtggcatgaccctcgtcacata
ggctggaaagatttcaccgcctacagatggcgtctgagccacaggccaaagacgggtttc
attagagtggtgatgtatgaagggaagaaaatcatggccgactcaggacccatctacgac
aaaacctatgctggcggtaggctagggttgttcgtcttctctcaagaaatggtgttcttc
tctgacctgaaatatgaatgcagaggtaggagcaaaatgacagtgaatataccagttgac
atccctagttcagaccaataccaagaacgccaatcatgggagaggctgatttaa
DBGET
integrated database retrieval system
