KEGG   Phocoena sinus (vaquita): 116749210
Entry
116749210         CDS       T07759                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RBX1-like
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03420  Nucleotide excision repair
psiu04066  HIF-1 signaling pathway
psiu04110  Cell cycle
psiu04114  Oocyte meiosis
psiu04120  Ubiquitin mediated proteolysis
psiu04141  Protein processing in endoplasmic reticulum
psiu04310  Wnt signaling pathway
psiu04350  TGF-beta signaling pathway
psiu04710  Circadian rhythm
psiu05170  Human immunodeficiency virus 1 infection
psiu05200  Pathways in cancer
psiu05211  Renal cell carcinoma
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    116749210
   04120 Ubiquitin mediated proteolysis
    116749210
  09124 Replication and repair
   03420 Nucleotide excision repair
    116749210
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    116749210
   04350 TGF-beta signaling pathway
    116749210
   04066 HIF-1 signaling pathway
    116749210
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    116749210
   04114 Oocyte meiosis
    116749210
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    116749210
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    116749210
  09162 Cancer: specific types
   05211 Renal cell carcinoma
    116749210
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    116749210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:psiu04121]
    116749210
   03400 DNA repair and recombination proteins [BR:psiu03400]
    116749210
Enzymes [BR:psiu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     116749210
Ubiquitin system [BR:psiu04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   116749210
  Multi subunit type E3
   SCF complex
    Ring finger protein
     116749210
   Cul2 complex
     116749210
   Cul3 complex
     116749210
   Cul4 complex
     116749210
   Cul7 complex
     116749210
   Cul8 complex
     116749210
   Cul9 complex
     116749210
DNA repair and recombination proteins [BR:psiu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      116749210
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      116749210
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 zf-C3HC4_2 zf-RING_11 FANCL_C PHD_NSD zf-RING_16
Other DBs
NCBI-GeneID: 116749210
NCBI-ProteinID: XP_032479228
LinkDB
Position
2:135955027..135955563
AA seq 108 aa
MAAAMDVDTPSCTNSGAGKKLFEVKKWNAVALWAWDIVIGNCAICRNHIMDLCIECQANQ
ASATSEECTVAWGVCNHAFHFHCISRWLKTQQVCPLDNREREFRKYGH
NT seq 327 nt   +upstreamnt  +downstreamnt
atggcggcagcgatggatgtggataccccgagctgcacgaacagtggcgcgggcaagaag
ctctttgaagtgaaaaagtggaatgcggtagccctctgggcctgggatattgtgattggt
aactgtgccatctgccggaaccacattatggatctttgcatagagtgtcaagccaaccag
gcgtctgctacttctgaagagtgcaccgttgcgtggggagtctgtaaccatgcttttcac
ttccactgcatctcccgctggctcaaaacacagcaggtgtgtccgttggacaacagagag
cgggaattccgaaagtatgggcactag

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