Phocoena sinus (vaquita): 116755999
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Entry
116755999 CDS
T07759
Symbol
C9orf72
Name
(RefSeq) guanine nucleotide exchange C9orf72 homolog isoform X1
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04140
Autophagy - animal
psiu05014
Amyotrophic lateral sclerosis
psiu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116755999 (C9orf72)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116755999 (C9orf72)
05022 Pathways of neurodegeneration - multiple diseases
116755999 (C9orf72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116755999 (C9orf72)
Membrane trafficking [BR:
psiu04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
116755999 (C9orf72)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
116755999
NCBI-ProteinID:
XP_032492038
Ensembl:
ENSPSNG00000002018
UniProt:
A0A8C9AZH7
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All DBs
Position
6:complement(76077883..76102200)
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AA seq
481 aa
AA seq
DB search
MSTLCPPPSPAVAKTEIALSGESPLLAATFAYWDNILGPRVRHIWAPKTEQLLLSDGEIT
FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTE
LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEV
IPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSS
AEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMY
APYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELAAFWRATSEEDMAQDTIIYTDESF
TPDLNIFQDVLHRDTLVKAFLDQVFHLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDT
QKGKKPFKSLRNLKIDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMT
F
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactctctgtccaccaccttctccagctgttgccaagacagagattgctttaagt
ggtgaatcccctttattagcagcaacctttgcttactgggacaatattcttggccctaga
gtaaggcacatttgggctccaaagacagaacagttacttctaagcgatggagaaataact
tttcttgccaaccataccctcaatggagaaatccttcgaaatgcagagagtggggcgata
gacgtaaagttttttgtcttgtctgaaaaaggagtaattattgtgtcattaatcttcgat
ggaaactggaatggggataggagcacctatggactatcaattatacttccccagacggag
ctgagtttctatctcccacttcacagagtgtgtgtggatagattaacacacattatccgg
aagggaaggatatggatgcacaaggaaaggcaagaaaatgtccagaagatcatcttggaa
ggcacagagcgaatggaagatcagggtcagagtattattccaatgcttactggagaagta
attcctgtaatggaactgctttcatctatgaaatcccacagtgtccctgaagaaatagat
atagctgatacagttctcaatgatgatgatattggtgacagttgtcatgaaggctttctt
ctcaatgccatcagctcccacttgcagacgtgtggctgttctgttgtagtaggtagcagt
gcggagaaagtaaataagatagtaagaacattatgcctttttctgactccagcagagaga
aaatgctccagattatgtgaagcagaatcatcatttaaatacgagtcagggctctttgta
caaggcctactaaaggattcaactggaagctttgtgcttcccttccggcaagtcatgtac
gcgccctatcccaccacacacatagatgtggacgtcaacaccgtcaagcagatgccaccc
tgtcacgaacatatttataatcagcgtagatacatgagatcagagctggcagcattctgg
agagccacttcagaagaagacatggctcaggataccatcatctacacggacgaaagcttc
actcctgatttgaatatttttcaagatgtcttacacagagacactctagtaaaagccttc
ctggatcaggtctttcatttgaaacccggtctatctctcaggagtactttccttgcacag
tttctgctcgtccttcacaggaaagccttgacactaataaaatatatagaagatgatacg
cagaaggggaaaaagccctttaaatcgcttcggaacctgaagatagaccttgatttaaca
gcagagggcgatcttaacataataatggctctagctgagaaaattaaaccaggcctccat
tcctttatctttggaagacctttctatactagtgtccaagagcgagatgttctaatgact
ttttaa
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