KEGG   Phocoena sinus (vaquita): 116757663
Entry
116757663         CDS       T07759                                 
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu04010  MAPK signaling pathway
psiu04064  NF-kappa B signaling pathway
psiu04120  Ubiquitin mediated proteolysis
psiu04140  Autophagy - animal
psiu04144  Endocytosis
psiu04380  Osteoclast differentiation
psiu04517  IgSF CAM signaling
psiu04620  Toll-like receptor signaling pathway
psiu04621  NOD-like receptor signaling pathway
psiu04622  RIG-I-like receptor signaling pathway
psiu04657  IL-17 signaling pathway
psiu04722  Neurotrophin signaling pathway
psiu04936  Alcoholic liver disease
psiu05132  Salmonella infection
psiu05133  Pertussis
psiu05135  Yersinia infection
psiu05140  Leishmaniasis
psiu05142  Chagas disease
psiu05145  Toxoplasmosis
psiu05152  Tuberculosis
psiu05160  Hepatitis C
psiu05161  Hepatitis B
psiu05162  Measles
psiu05168  Herpes simplex virus 1 infection
psiu05169  Epstein-Barr virus infection
psiu05170  Human immunodeficiency virus 1 infection
psiu05171  Coronavirus disease - COVID-19
psiu05200  Pathways in cancer
psiu05222  Small cell lung cancer
psiu05235  PD-L1 expression and PD-1 checkpoint pathway in cancer
psiu05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    116757663 (TRAF6)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    116757663 (TRAF6)
   04064 NF-kappa B signaling pathway
    116757663 (TRAF6)
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    116757663 (TRAF6)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    116757663 (TRAF6)
   04140 Autophagy - animal
    116757663 (TRAF6)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    116757663 (TRAF6)
   04621 NOD-like receptor signaling pathway
    116757663 (TRAF6)
   04622 RIG-I-like receptor signaling pathway
    116757663 (TRAF6)
   04657 IL-17 signaling pathway
    116757663 (TRAF6)
  09156 Nervous system
   04722 Neurotrophin signaling pathway
    116757663 (TRAF6)
  09158 Development and regeneration
   04380 Osteoclast differentiation
    116757663 (TRAF6)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    116757663 (TRAF6)
   05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
    116757663 (TRAF6)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    116757663 (TRAF6)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    116757663 (TRAF6)
   05161 Hepatitis B
    116757663 (TRAF6)
   05160 Hepatitis C
    116757663 (TRAF6)
   05171 Coronavirus disease - COVID-19
    116757663 (TRAF6)
   05162 Measles
    116757663 (TRAF6)
   05168 Herpes simplex virus 1 infection
    116757663 (TRAF6)
   05169 Epstein-Barr virus infection
    116757663 (TRAF6)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    116757663 (TRAF6)
   05135 Yersinia infection
    116757663 (TRAF6)
   05133 Pertussis
    116757663 (TRAF6)
   05152 Tuberculosis
    116757663 (TRAF6)
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    116757663 (TRAF6)
   05140 Leishmaniasis
    116757663 (TRAF6)
   05142 Chagas disease
    116757663 (TRAF6)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    116757663 (TRAF6)
  09167 Endocrine and metabolic disease
   04936 Alcoholic liver disease
    116757663 (TRAF6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:psiu04131]
    116757663 (TRAF6)
   04121 Ubiquitin system [BR:psiu04121]
    116757663 (TRAF6)
Enzymes [BR:psiu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     116757663 (TRAF6)
Membrane trafficking [BR:psiu04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    116757663 (TRAF6)
Ubiquitin system [BR:psiu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    116757663 (TRAF6)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 Sina_ZnF Spc29 SlyX TRAF3_RING RING_XB3-XBAT31 DUF3450 U-box zf-RING_11 DUF4455 CCDC39 Myosin_tail_1 PspA_IM30 DUF16 AAA_13 PUMA_CC DUF7310 ATG16 Med21 HMMR_N Laminin_II DUF7607 EzrA UPF0242 TMF_DNA_bd DUF1664 CENP-F_leu_zip
Other DBs
NCBI-GeneID: 116757663
NCBI-ProteinID: XP_032495548
Ensembl: ENSPSNG00000020184
LinkDB
Position
8:complement(87804999..87835796)
AA seq 570 aa
MLLKIFLRRRKRHFLSCYFFRAVDNHLTMSLLHWENSCGSSQSESDCCAAMAASSCGAAA
KDDSVSGTASTVNLSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCK
ACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDH
RAHCEFALMNCPQCQRPFQKCQLNIHIVKECPRRQVSCVNCAVSMAFEDKEIHDQNCPLA
NVICEYCNTMLIREQMPNHYDLDCPTAPVPCTFSTFGCHEKMQRNHLARHLQEDTQSHMR
MMAQAVQTLSLAIAPAPQRGMLPCDSASLPRISSGCHSEVQNFQETIQQLEGRLVRQDHQ
IRELTAKMETQSTYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKSQEEEKP
VVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRL
TILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDT
LLVRCEVSTRFDMGSLRREGFQPRSTDLGM
NT seq 1713 nt   +upstreamnt  +downstreamnt
atgctactcaaaatctttttgagaagaagaaaaaggcattttttgtcttgctatttcttc
agagcagtcgataatcaccttactatgagtctgctacactgggaaaacagctgtggatcc
agccagtctgagagcgactgctgtgctgccatggccgccagctcctgtggtgctgcagca
aaagatgacagtgtgagtggaactgccagcacagtgaatctttccagctcttttatggaa
gagatccagggatatgacgtggaatttgacccacccctggaaagcaagtatgaatgcccc
atctgcttgatggcattacgggaagcagtgcaaacaccgtgcggccacaggttctgcaaa
gcctgcatcatcaaatcaataagggatgcaggtcacaaatgtccagttgacaatgaaata
ctgctggaaaatcaactctttcctgacaattttgcaaaacgagagattctttctctgatg
gtgaagtgtccaaatgaaggttgtctgcacaagatggaactgaggcatcttgaggatcac
cgagcacattgtgagtttgctcttatgaattgtccccaatgccaacgtcccttccaaaaa
tgccaacttaatattcacattgtcaaggagtgtccaaggagacaggtttcttgtgtaaac
tgtgctgtatcgatggcatttgaagataaagagattcatgaccagaactgtcctttggca
aatgtcatctgtgaatactgcaacaccatgctcatcagagaacagatgcctaatcattat
gatctagactgtcctacagccccagttccatgcacattcagtacttttggttgccatgaa
aagatgcagaggaatcacttggcacgccacctgcaagaggatacccagtcgcacatgaga
atgatggcccaggctgttcagactttaagccttgcgatagctcccgcacctcagcgtggc
atgctgccatgtgattctgcctctctgccccggatttcctctgggtgtcactcagaggtc
cagaatttccaagaaaccattcaacagttagagggtcgccttgtaagacaggaccatcaa
atccgggagctgactgcaaaaatggaaactcagagcacgtatgtaagtgagctaaaacga
actattcgaacccttgaggacaaagttgctgaaatagaagcacagcagtgcaatggaatt
tacatctggaagattggcaattttgggatgcacttgaaatctcaagaagaggagaaacct
gttgtcattcacagccccggattctacacaggcaaacccggctacaaactatgcatgcgc
ctgcacctgcagctaccgactgcacagcgctgtgccaactacatatccctcttcgtccac
acgatgcaaggagagtatgacagccacctcccgtggcccttccagggtacgatacgcctt
accatccttgatcagtctgaagcacctgtaaggcaaaaccatgaagagataatggacgcc
aaaccagagctgcttgccttccagagacccacaatcccacggaaccccaaagggtttggc
tatgtgacctttatgcatctggaagccctaagacaaagaaccttcatcaaggacgacacg
ttattagtacgctgtgaggtctccacccgctttgacatgggcagtcttcggagggagggt
tttcaaccacgaagtactgacttggggatgtag

DBGET integrated database retrieval system