Pseudomonas silvicola: LZ023_06495
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Entry
LZ023_06495 CDS
T10729
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psiv Pseudomonas silvicola
Pathway
psiv03030
DNA replication
psiv03410
Base excision repair
psiv03420
Nucleotide excision repair
psiv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LZ023_06495 (ligB)
03410 Base excision repair
LZ023_06495 (ligB)
03420 Nucleotide excision repair
LZ023_06495 (ligB)
03430 Mismatch repair
LZ023_06495 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiv03032
]
LZ023_06495 (ligB)
03400 DNA repair and recombination proteins [BR:
psiv03400
]
LZ023_06495 (ligB)
Enzymes [BR:
psiv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LZ023_06495 (ligB)
DNA replication proteins [BR:
psiv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LZ023_06495 (ligB)
DNA repair and recombination proteins [BR:
psiv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LZ023_06495 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LZ023_06495 (ligB)
MMR (mismatch excision repair)
DNA ligase
LZ023_06495 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LZ023_06495 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
HHH_5
HHH
TilS
DUF3701
Motif
Other DBs
NCBI-ProteinID:
WAH59201
LinkDB
All DBs
Position
complement(1389164..1390846)
Genome browser
AA seq
560 aa
AA seq
DB search
MNPALLLLGALLVPALATADSCPDWNPAHATLQLTALQAQLSQWDTQYHRDGVSAIADEL
YDQARLRLDHWQQCFPAAGSDSPQPLRSARGTVPHPIAHTGVGKHAEQATVADWLRHKTD
VWVQPKVDGVAVTVTYRQGRLHQVISRGDGVQGHDWTANARAIAALSRPLPQPVDLVLQG
ELYWRYEGHVQARDGSDNARGRVAGLMARTQLDAADGARIGLFAWDWPEGPPTLPERLAG
LAALGFELETRYSQPITDADQANQWRNHWYNTPLPFASDGLILRLSQRPPASRWQAKVPY
WIAAWKYPYAQALAHVREVTFSIGRTGRITPVLELLPVRLDDRTVRRVSVGSLDRWRAMD
IRPGDQVAVQLAGLTIPRLGDVVWRAPERQPLTVPDPGAYHALSCWRPTEGCQAQFRARL
AWLSGKQGLHMPHVGAGTWERLIQAGKVEDLAGWLLLDAQALAEVPRLGARSSARLLESL
QAARRHGLQGWLKALGAPAMGTSSTEQTWQQLANRSLEQWQAQPGIGATRARHLFEFFRH
PDVLSVADTLRTVGIEGFTG
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccgcccttctgctgttgggtgccctgctggtaccggccctggcaactgctgac
agttgcccggactggaaccccgcccacgccacgcttcagctcactgcactgcaagcacaa
ctcagccagtgggacacccaatatcaccgcgacggcgtctccgccatcgccgacgaactc
tatgaccaggcccgccttcggctagaccactggcagcagtgttttccggccgcgggctct
gacagcccgcaaccgctgcggtcggcccgcggtaccgtaccgcaccctattgcccacacg
ggcgtaggcaagcatgccgagcaggccacggtcgccgactggttgcggcacaagaccgat
gtctgggtgcagcccaaggtggatggcgtggcggtgacggtgacctaccggcaaggcagg
ctgcaccaggtcatcagccgcggcgacggcgtgcaggggcatgactggaccgccaatgcc
cgtgccatcgccgccttgtcccggcccctgccccagccggtggacctggtcctgcagggc
gagctttactggcgttacgaagggcatgtccaggcccgcgatggcagcgacaacgcccgg
ggcagggtcgctgggctcatggctcgtacccagctggacgccgccgacggtgctcgtata
ggcctgttcgcatgggactggccagaggggccacccacattgcccgaacgcctggcgggg
ctggcggccctggggttcgagctggagacacgttacagccagcccatcactgacgccgac
caggccaaccagtggcgcaaccattggtataacacccccctgccattcgccagtgacggc
ctgatactgcgcctgagccagcggccacccgccagccgctggcaggccaaggtgccgtat
tggatagccgcctggaaatatccctatgcccaggcgctggcccatgtgcgcgaggtgaca
ttcagcatcggccgcaccgggcgcataacacccgtgctggaactgctgccggtgcgcctg
gacgaccgcacggtaagacgcgtcagcgtcggctcgctcgaccgttggcgcgccatggac
atccggcccggggatcaggtggccgtgcagcttgccggcctgaccatcccgcggctgggt
gacgtggtatggcgcgcgcccgaaaggcagcccctcacggttcccgacccgggtgcctac
cacgcgctcagttgctggcgccccaccgagggttgccaggcgcagtttcgtgcgcgcctg
gcctggctgagcggtaaacaggggttgcacatgccccacgtcggggccgggacgtgggag
cgcctgatccaggccggaaaagtcgaagacctggccggctggctgctgctggacgcgcag
gccctggccgaggtaccacgactgggtgcacgcagcagcgcccgcctgctggaaagcttg
caggcggctcgccgccacggcctgcagggctggctcaaggcgctcggggcacctgccatg
ggtacctcaagtacagaacagacctggcaacagctggccaaccgaagccttgagcaatgg
caagcgcagcctggcatcggtgcgacgcgggccaggcatctgttcgaattcttccgtcac
ccggatgtgctctccgtcgccgacacactccgtactgtaggcattgaaggctttactggt
taa
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integrated database retrieval system
