Pseudomonas sp. JY-Q: AA098_19550
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Entry
AA098_19550 CDS
T09824
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psjy
Pseudomonas sp. JY-Q
Pathway
psjy03030
DNA replication
psjy03410
Base excision repair
psjy03420
Nucleotide excision repair
psjy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psjy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AA098_19550
03410 Base excision repair
AA098_19550
03420 Nucleotide excision repair
AA098_19550
03430 Mismatch repair
AA098_19550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psjy03032
]
AA098_19550
03400 DNA repair and recombination proteins [BR:
psjy03400
]
AA098_19550
Enzymes [BR:
psjy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AA098_19550
DNA replication proteins [BR:
psjy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AA098_19550
DNA repair and recombination proteins [BR:
psjy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AA098_19550
NER (nucleotide excision repair)
GGR (global genome repair) factors
AA098_19550
MMR (mismatch excision repair)
DNA ligase
AA098_19550
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AA098_19550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ANI35579
LinkDB
All DBs
Position
complement(4352096..4354426)
Genome browser
AA seq
776 aa
AA seq
DB search
MTAETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQR
VGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQPGAVDYSCEPKLDGLAV
SLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSKAGF
DRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSESIGDSHIGI
LEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPQNARPVEVPSECPVCGSQVERTQLVK
RSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLQFEQVVGLEGFAEVSTQKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLAR
SLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELA
AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAADGIDLRQALAAKQADAVR
EFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLERMSRDIAKDK
LESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAEQGIAV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaaacccgtatcctcgaactgcgtgccgagctcgatcagcataactatcgc
tactacgtgctcgacgagcccagcgtgcctgatgccgaatacgaccgcctgttcaacgag
ctcaaggcgctggaagccgaacacccgcacctggtaacccccgactcgcccacccagcgc
gttggcggcgctgccttggctgcgttcagccaggtgcgccacgaagtgcccatgctcagc
ctgggcaacgcctttgaagaagccgacctgcgtgagttcggtcgccgtgtggtagaaggc
ctcgatcagccgggtgcggtcgactacagctgcgaacccaagctcgatggcctggccgtg
agcctgctgtaccgcgacggacagttggtgcagggcgccacccggggcgacggcaccact
ggcgaagacatcagcgccaacgtacgcaccgtgcgcaacatcccgctcaagttgcagggt
aagggctggccggcagtgctggaggtgcgcggcgaggtgtacatgagcaaggccggtttc
gaccggctcaatgccgcccaggccgaggccggtggcaagaccttcgccaacccgcgcaat
gccgctgctggcagcttgcgccagctggactcgaaaatcaccgccagccgcccactggag
ttctgctgctatggcgtcggccagttgtccgaaagcatcggcgacagccacatcggcatc
ctcgagcaactcaaggcctggggcctgccgatcagccgcgagctcaagcatgcggcgggc
atcgaagaatgcctggcctactaccgcgacattggcgagcggcgtaacagcctgccgtat
gagatcgacggtgtagtgttcaaggtcaacagcctggccgcccagcgcgagctgggcttc
cgcgcccgtgagccgcgctgggcgattgcccacaagttcccggccatggaagagctgacc
gaggtgctggacgttgagttccaggttggccgtacgggtgccgtaacgcctgtggcgcgg
ctgaagccggtcaaggtggccggtgtgaccgtgtccaacgccaccttgcacaacatggac
gaaatcgcccgcctgggcctgcgcatcggcgacacggtgatcattcgcagggccggcgac
gtgatcccgcaggtgatgcaggtggtgctggagcgccgtccgcaaaacgcccgcccggta
gaagtgccaagcgagtgcccggtgtgtggttcgcaggtcgagcgcacccagctggtcaaa
cgcagcaagggcaaggaaaccaccagcgaaggtgcggtgtaccgctgcgtcggccgcctg
gcctgtggcgcgcagctcaagcaggcgatcattcattatgtgtcgcgccgtgccatggac
atcgacggcctgggtgagaagagtgtcgagcagttggtggatgaaggcctgatcggctcg
ccggctgacctgtacaagctgcagttcgagcaggtcgtcggccttgaaggctttgccgag
gtgtcgacccagaagctgctggatgccattgaagccagcaagcgcccgagcctggcgcgc
ttcatctacgcgctgggcatcccggatgtcggcgaggagactgccaaggtgctggcccgc
tcgctgggcagcctggcgcgcgtgcagcaggcattgccgcaggtgctgacctatttgccg
gacatcggtctcgaagtggcctacgagatccacaatttctttgaagacgagcacaaccag
aaggttatccagcagctgctcgacagcggtatgcagttgcaggacgaaggtgagctggct
gccgaatttgccgccagcaccaccttggccgggatgatcgccaagctcgacattgcctcc
gtcggcccgaccggtgccgagaagttggtggccaagctcgacagcctggacaagatcatc
gccgccgacggcattgacctgcgccaggccctggcggccaagcaggccgacgcagtgcgt
gagttcttcaaggatgaagcaaaccagaaactggcccgggacatcgaagcgcagttgctg
gcgttcggcatgcactggagcagcgagaagaaggtggccgaaggcttgccgctggccggc
cagacctgggtgctgaccggtacgctggagcgcatgagccgcgacattgccaaggacaag
ctggaaagcctgggggccaaggttgccggttccgtttccggcaagacccactgcgtggtg
gcagggccgggggcaggttccaagctggccaaggctgctgagctgggtgtgaaggtactg
gacgaagatgccttcgtcacattcctggccgaacagggcatagcggtctag
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