KEGG   Pseudomonas gorinensis: U771_23845
Entry
U771_23845        CDS       T02969                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
psk  Pseudomonas gorinensis
Pathway
psk03030  DNA replication
psk03410  Base excision repair
psk03420  Nucleotide excision repair
psk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    U771_23845
   03410 Base excision repair
    U771_23845
   03420 Nucleotide excision repair
    U771_23845
   03430 Mismatch repair
    U771_23845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psk03032]
    U771_23845
   03400 DNA repair and recombination proteins [BR:psk03400]
    U771_23845
Enzymes [BR:psk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     U771_23845
DNA replication proteins [BR:psk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     U771_23845
DNA repair and recombination proteins [BR:psk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     U771_23845
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     U771_23845
   MMR (mismatch excision repair)
    DNA ligase
     U771_23845
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      U771_23845
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT Nlig-Ia DNA_ligase_ZBD 5_3_exonuc PTCB-BRCT DUF4796_N
Other DBs
NCBI-ProteinID: AHC37260
LinkDB
Position
complement(5250283..5252649)
AA seq 788 aa
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFNELKALEAEHPELVTRDSPTQ
RVGSAALSAFTQVRHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTA
DISDTHIGNLKQLQKWGLPISHELKLAKGIQACLDYYRDIGERRNSLPYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVTERRPENARAVQIPESCPVCGS
HVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQ
LVDEKLIGSPADLYTLKYEQIIDLEGFADISSKKLIAAIENSKSPTLARFIYALGIPDVG
EETAKVLARSLGALERVQRALPEVLTYLPDVGLEVAHEIRSFFDDRHNQDVIGALLAPDK
CGLQLQDEGALAAEFAASTTLGGLLDKLNVPSVGPGAAQKLADKFGSLEGVIKADWLDMR
QALPEKQAKAVREFFDNPDHANHALAIERQLEEFGMHWQSEKKVIEGLPEAGHTWVLTGS
LERMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEDAFVAF
LAGHHITV
NT seq 2367 nt   +upstreamnt  +downstreamnt
atgaccgccgcccacacccgcatccttgaactgcgcgctgaactggatcagcacaattac
cgttaccacgtgctcgacgagccgagcattccggacgccgagtacgaccgcttgttcaat
gagctcaaggccctggaagccgagcacccggaactggtgacgcgtgattcgccgacgcag
cgggtcggcagtgcggcgttgtcggcctttacccaggtgcgtcatgagatcccgatgctc
agcctgggcaacgcgttcgatgaaaccaccatgctcgagttcgatcgccgcgtcaccgag
gggctcgacctgccggtgggcgatctgtttggcggtggcgctgcggtggagtacagctgt
gaaccaaagctggatggcctggcggtcagcctgctgtaccaggacggcgaactggtgcgc
ggcgccacccgcggcgacggcactacgggcgaagacatcagtgtcaatgtgcgcaccgtg
cgcaatatcccgttgaaactgcacggcaccggctggccggccaccctggaagtgcgcggc
gaagtgttcatgtccaaggccggttttgagcgactgaacgcctcgcaactggaagtcggc
ggcaagaccttcgccaatccgcgtaacgccgccgccggcagcctgcgccagctggactcg
aagatcaccgccagccgcccgctggagttctgctgctacggcattggccaggtcaccgca
gacatcagtgacacccacatcggcaatttgaaacagttgcagaagtggggcctgccgatc
agccatgagctgaagttggccaagggcatccaggcatgcctggactactaccgcgatatc
ggcgagcgacgtaacagcctgccctatgaaatcgacggcgtggtgttcaaggtcaacagc
attgcctcccagcgcgaactgggtttccgtgcccgtgagccgcgttgggcgatcgcgcac
aaattcccggccatggaagaactgaccgagctgctcgacgtggaattccaggttggccgc
accggtgccgtcacgccggtggcacgactgaaaccggtcaaggtcgcgggtgtgaccgtg
tccaatgccaccttgcacaacatggacgaagtggcgcgcctgggcctcatgatcggcgac
accgtgatcatccgccgtgccggagacgtgatcccgcaggtggtgtcggtggtcaccgag
cgccgtccggaaaatgcccgcgccgtgcagatccccgagagttgcccggtgtgcggctcc
cacgtcgagcgcacgcaactggtcaagcgcagcaagggcaaggaaaccgtcagcgaaggc
gcggtgtaccgctgtgtcggccgcctggcctgtggcgcgcagctcaagcaggcgatcatc
catttcgtctcgcgccgggcgatggacatcgatggcctgggtgacaagaccatcgagcag
ttggtggatgaaaaactcattggttcgccggctgacctctacacgctcaagtacgaacag
atcatcgacctggaaggcttcgccgatatctccagcaagaagctgatcgccgccatcgag
aacagcaagagcccgaccctggcgcgcttcatctacgccttaggcattcccgacgtgggc
gaggagaccgccaaggtgctggcgcgttccctgggggccttggagcgcgtgcagcgcgcg
ttgccggaggtgctgacgtacctgccggacgtgggcctggaagtcgcgcacgagatccgc
agcttctttgatgaccgccacaaccaggacgtgatcggcgcactgttggcgccggacaaa
tgcggcctgcaattgcaagacgaaggcgccctggccgccgaattcgccgccagcaccacc
ctcggcggtttgctcgacaaactcaatgtgcccagcgtcggtcccggcgccgcgcagaaa
ctggcggacaagttcggctccctcgaaggcgtgatcaaggctgactggctcgatatgcgc
caggcgctgcccgagaagcaggccaaggctgtgcgcgagttcttcgataaccccgaccat
gccaaccatgccctggccatcgagcggcagctcgaggagttcggcatgcactggcagagc
gagaagaaagtgatcgaaggcttgccggaagcagggcatacctgggtgctgaccggctcc
ctggagcggatgagccgcgatgtcgccaaggacaagctcgaaagcctcggcgccaaggtg
gccggttcggtgtcggcgaaaacccactgcgtggtggccgggccgggtgctggttcgaag
ttggccaaggccagcgaactgggcctgaaggtgctggacgaagacgctttcgtggccttc
ctcgccgggcatcacatcaccgtctga

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