Phocoenobacter skyensis: A6B44_07355
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Entry
A6B44_07355 CDS
T06668
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psky
Phocoenobacter skyensis
Pathway
psky03030
DNA replication
psky03410
Base excision repair
psky03420
Nucleotide excision repair
psky03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psky00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A6B44_07355 (ligA)
03410 Base excision repair
A6B44_07355 (ligA)
03420 Nucleotide excision repair
A6B44_07355 (ligA)
03430 Mismatch repair
A6B44_07355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psky03032
]
A6B44_07355 (ligA)
03400 DNA repair and recombination proteins [BR:
psky03400
]
A6B44_07355 (ligA)
Enzymes [BR:
psky01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A6B44_07355 (ligA)
DNA replication proteins [BR:
psky03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A6B44_07355 (ligA)
DNA repair and recombination proteins [BR:
psky03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A6B44_07355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A6B44_07355 (ligA)
MMR (mismatch excision repair)
DNA ligase
A6B44_07355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A6B44_07355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QLB23026
LinkDB
All DBs
Position
1559914..1561944
Genome browser
AA seq
676 aa
AA seq
DB search
MSNSIETKHNELKDQLRKYEYHYHVLDNPIVPDAEYDRLMNKLKELELTYPDLITADSPT
QRVGAKPLDGFSQVTHRVPMLSLDNAFSDDELDHFLRRIQDRVAINVSSLEFCCEPKLDG
LAVSILYKNGILTQAATRGDGATGEDITANIRTIRNIPLKLNMTHPPAHLEVRGEVFMPH
KGFNLLNEKALSKGEKTFANPRNAAAGSLRQLDPNITRQRPLTLNAYGIGIYESEQPLPN
THFSRLQWLKSIGIPINNEIKLATGREGLIEFYHSIEYKRDSLGYDIDGTVLKINDIKLQ
EQLGFISKAPRWAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNAT
LHNSDEIERLGICINDTVIVRRAGDVIPKIVGVVLERRPEFAKSITYPTACPVCNSSIVR
IEGEAIIRCTGGLFCNAQRREILKHFVSRKAMDIDGVGEKLIEQLMKKEIVHTPADLFKL
EKEMLVRLERMGEKSAQNALQSIEKAKSTTLARFLFSLGIREVGEATALNLANHFGSLEA
IREANLEQLKEVQDVGDVVANHIYRFWLEPHNISVVEELIALGVHWENIVQQDIKDNPLK
NKNVVLTGSLSQLTRDQAKALLQSMGCKVSGSVSSKTDFLIAGEKAGSKLTKAQELDIEI
LSEQDLINLTVSVKTE
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaactctatcgaaactaaacataatgaactaaaagatcaactacgtaagtatgaa
taccattaccacgtattagataacccgatcgtaccagatgcagaatatgatcgtttaatg
aataaactcaaagagttagaactaacatatcccgatcttattactgccgattcacccact
caacgagttggagctaaacctttagatggttttagtcaggtaacacatagagtgccaatg
ctttctttagataatgcattttccgatgatgagttggatcattttttacgtcgcattcaa
gatcgtgttgcaattaatgtttcttctcttgagttttgttgtgaacccaaattagatgga
cttgccgtcagtattctttataaaaatggtattctcactcaagccgcaacacgaggagat
ggagcgacaggagaagatattacagccaatattcgcactattcgtaatattccattaaaa
cttaatatgacacatccacctgctcatttagaagtacgtggagaagtgtttatgccgcac
aaaggttttaatttacttaatgaaaaagcactctccaaaggagaaaaaacattcgcaaat
ccacgtaatgcagcagcgggctctttacgccaactcgatcctaatattactcgtcaacgt
cctttaacactaaatgcctatggcattggtatttatgaaagtgagcaaccactccctaat
acacatttttcacgtttacaatggctaaagtctattggcattcctattaataatgaaata
aaacttgctactggaagagaagggttaatcgagttttatcattctattgagtacaaacgt
gattctcttggctatgatattgatggcactgtacttaaaattaacgacattaaacttcaa
gaacaattaggttttatctctaaagcacctcgttgggcaattgcttataaatttcccgct
caagaagaaatgacaattttaaatgacgttgaatttcaagtaggacgaacgggagcgatt
actccagttgcaaaattagagcctgtatttgtaggtggtgttaccgtaagtaatgcaacc
ctacataacagtgatgaaattgaacgtttagggatttgtattaatgatactgtgattgta
cgtcgagcaggcgatgttattcccaaaattgttggtgttgttttagaacgtcgtcctgaa
tttgcaaaaagtatcacttatcctaccgcttgccctgtttgtaactcttctatcgtccga
attgaaggagaggctattatacgttgtactggaggattattctgtaacgcacaacgcaga
gagattttaaaacattttgtctctcgtaaagctatggatattgatggagtgggagaaaag
cttattgaacaattaatgaagaaagaaattgttcatacacctgctgatctttttaagctt
gaaaaagaaatgctagttcgccttgaaagaatgggagaaaaatctgcacaaaacgcatta
caaagtatagaaaaagccaaatctactacccttgctcgttttctcttttcattaggtata
cgtgaggtgggagaggcaacagcgctcaatttagcgaatcattttggctctcttgaagca
attcgtgaagcaaatcttgagcaattaaaagaagttcaagatgtaggagatgttgtagct
aatcatatctatcgcttttggctagaaccacataatatttcggtagtggaagaattaatt
gcactcggagtacattgggaaaatatcgtacagcaagatattaaagataaccctctcaaa
aataaaaatgtggtactcacaggctctctatcacaactcacacgagatcaagcaaaagcc
ttgttgcaaagtatgggatgtaaagtctctggaagtgtatccagcaaaacagacttctta
attgcaggtgaaaaagcggggtcaaaattaactaaagctcaagagttggatattgaaatt
ttaagtgaacaagatctaattaatctcacagtctcagttaaaacagaataa
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