Pirellula staleyi: Psta_2044
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Entry
Psta_2044 CDS
T01147
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psl
Pirellula staleyi
Pathway
psl03030
DNA replication
psl03410
Base excision repair
psl03420
Nucleotide excision repair
psl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Psta_2044
03410 Base excision repair
Psta_2044
03420 Nucleotide excision repair
Psta_2044
03430 Mismatch repair
Psta_2044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psl03032
]
Psta_2044
03400 DNA repair and recombination proteins [BR:
psl03400
]
Psta_2044
Enzymes [BR:
psl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Psta_2044
DNA replication proteins [BR:
psl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Psta_2044
DNA repair and recombination proteins [BR:
psl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Psta_2044
NER (nucleotide excision repair)
GGR (global genome repair) factors
Psta_2044
MMR (mismatch excision repair)
DNA ligase
Psta_2044
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Psta_2044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
RNA_ligase
DUF4784
Tugs
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
ADB16718
UniProt:
D2R1J9
LinkDB
All DBs
Position
complement(2629861..2631891)
Genome browser
AA seq
676 aa
AA seq
DB search
MSGVTPEILERLQALREAIRRHDYLYYVRAQPEISDLEYDRLMQDLTTIEASFPELVTPD
SPTQRVGEEPMEGLVQVAHRAPMLSIENSYTVEDLQKFAERTSKSLDGEAVEWVVELKVD
GVAISVRYENGLLVQALTRGNGEVGDDVTHNVRTIADVPLRLYGDKIPAVLEVRGEVYMT
NSDLVLLNKRQQELGKELYANTRNVASGTIRLLDPKLCAERKLRMLVHGVGVCEGMTAEN
HMQFLEQVSSLGLPPTPHCKCFATFSEAVKYCEEIPERLHELDFEVDGLVLKVNRFDQRA
KLGQRSKSPRWVIAYKFEKYEATTKLLGISVQVGKTGAITPVAELEPVQLAGTTVSRASL
HNADEIVRKDIRIGDIVVVEKAGKIIPHIVRVEAAERTTDLPVFQFPTHCPVCGSDVAKD
EGGVYIRCTNPSCPAQLREKLRFFATRGAMDIEGLGDKLVDQLVASKLVTCYGDLYRLTL
DKLTSLERMGEKSATKLLEGIVASKSRPLSRLLNGLSIRHIGSNGSQVLARHFGTLDAIR
QATLEDLSRVSEVGEITAASVYEFLHSDYGKTTIDDLVALGLNTQEPKSAIPTGEGIFAG
KTFVVTGTLSKFSRDEVEDLIEKHGGKASSSVSKKTDYLLAGAEAGSKLAKAESLGVKIL
SEADFIALLPTETAAD
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcgtcactcctgaaattctcgagcgtttgcaagcgctgcgcgaagcgattcgt
cggcacgactacttatattatgttcgtgctcagcccgagatttcggatctcgagtacgac
cgcctgatgcaagatttgaccacgatcgaggcgagtttccccgagcttgtgactcctgac
agccccacgcagcgtgtcggtgaagagccgatggaagggctcgtgcaagtggcgcatcgg
gcaccgatgctgtcgatcgaaaactcctacacggtcgaagatctgcaaaagtttgccgag
cggacttcgaagtcgctcgacggggaagctgtcgagtgggtggtcgagctgaaagtcgat
ggcgtggcgatttccgtgcgctacgaaaatggtttgctagtgcaggcgctcacgcgcggc
aacggcgaagtgggagacgacgtcactcacaacgtacgaaccatcgccgatgtgccgctg
cgactctatggcgacaagatcccagccgttctcgaagtgcgcggcgaagtctacatgacc
aacagcgatctggtgctgctcaacaagcggcagcaagagcttggcaaagaactgtatgcc
aacacacgcaatgtcgcctcgggaacgattcgtttgctcgatcccaaactctgtgccgag
cgtaagctgcgcatgctggtgcatggcgttggggtttgcgagggcatgacagccgagaat
catatgcagtttctcgagcaagtaagttcgctgggactccccccgactcctcactgcaaa
tgctttgcgacgttcagcgaagcggtgaaatactgtgaagagattcccgaacgtttgcac
gagctcgatttcgaagtcgatggtctggtgctgaaggtcaaccgtttcgatcagcgtgcg
aaactgggtcagcggagtaagagtccgcgctgggtgattgcctacaagttcgagaaatac
gaagcgacgaccaagctgctggggatctctgtgcaagtcggcaaaacaggggcgatcact
cctgttgccgaactcgagccggtgcaactcgccggcacaactgtcagccgagccagtctg
cacaatgccgacgagattgttcgcaaagacatccgcattggcgacattgtggtggtcgaa
aaagcgggcaagatcatcccacacatcgtgcgcgtggaagctgccgagcgcactaccgat
ctgccggtgtttcagtttcccacgcactgtcccgtgtgtggcagcgacgtcgccaaagac
gaaggtggcgtttacattcgctgcaccaatccgagctgccccgcccagctgcgcgagaaa
cttcgtttctttgccacgcgtggcgctatggatatcgaagggctcggcgacaaactggtc
gatcaactcgtcgccagcaaactggtgacttgctacggcgatctctaccgtctgacgctc
gacaaactcacgagtctcgagcgtatgggagaaaagagcgcaacgaaacttctcgaaggg
attgtggcgagcaaatcgcgccctctcagtcggctgctcaacggcctgtcgattcgccac
atcggctcgaatggctcacaggtccttgcgcggcacttcggcaccctcgatgcgatccgc
caggccacgctggaggatctttcgcgcgttagcgaagttggcgagatcaccgccgccagt
gtctacgagttcctccacagcgactacggcaaaaccaccatcgacgacctcgtcgcgctc
gggctcaatacccaagagccgaaatcggcgatccccacgggcgaaggaattttcgcggga
aagacgtttgtcgtcaccggcacgctcagcaaattctcgcgcgacgaagtcgaagacctc
atcgaaaaacatggtggcaaagccagctcgagcgtctcgaagaaaaccgactacctgctt
gccggtgcagaagcagggagcaaactcgcgaaagccgaatcgctcggggtcaaaatcctg
agcgaggccgatttcatcgctctattgcccacagaaacagccgccgattaa
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