Pseudarthrobacter sp. L1SW: KTR40_06255
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Entry
KTR40_06255 CDS
T10267
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psls Pseudarthrobacter sp. L1SW
Pathway
psls03030
DNA replication
psls03410
Base excision repair
psls03420
Nucleotide excision repair
psls03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KTR40_06255 (ligA)
03410 Base excision repair
KTR40_06255 (ligA)
03420 Nucleotide excision repair
KTR40_06255 (ligA)
03430 Mismatch repair
KTR40_06255 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psls03032
]
KTR40_06255 (ligA)
03400 DNA repair and recombination proteins [BR:
psls03400
]
KTR40_06255 (ligA)
Enzymes [BR:
psls01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KTR40_06255 (ligA)
DNA replication proteins [BR:
psls03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KTR40_06255 (ligA)
DNA repair and recombination proteins [BR:
psls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KTR40_06255 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KTR40_06255 (ligA)
MMR (mismatch excision repair)
DNA ligase
KTR40_06255 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KTR40_06255 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
DNA_meth_N
Auto_anti-p27
HHH_3
Motif
Other DBs
NCBI-ProteinID:
UEL29717
LinkDB
All DBs
Position
1360388..1362628
Genome browser
AA seq
746 aa
AA seq
DB search
MSTGPGPAEQIATRTTEPVEPEAVPSDSVRGEYEDLVDLVRKYRFAYYQEDAPLVSDAEF
DELFRRLEEIEALHPELVANDSPTQEVGGEVSAAFAAVEHLQRMYSLEDVFSLEELEAWL
TKAAAGIEKLGNGTLPAAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLT
IKEIPQELQGSGFPAEMEVRGEVFIPSKEFAEFNEALIEAGKAPLANPRNAAAGSLRQKD
PAETAKRPLKMFVHGIGAREGLEARSQSETYDLLKGWGLPVSPYSEVLGSLDEVLEFIKR
YGDKRHKLLHEIDGIVIKVDDFATQRALGYTTRVPRWAVAYKYPPEEVHTKLLDIQVNVG
RTGRVTPFGLMEPVKVAGSTVEMATLHNQDVVKAKGVKIGDIVVLRKAGDVIPEIVGPVL
ALRDQQDPPVRDFVMPTECPSCGTPLAPAKEGDVDIRCPNAKSCPSQLRERVFHLAGRGA
FDIEALGWEAAIALTQPAEPEVPPLTSEAALFDLTPEDLAGVRIRREKRSKGVPTGEYEL
VPYFYSKGTAKTPSKPTATTEKLFKELDKAKAQPLWRVLVALSIRHVGPRASRALATAFG
SMDAIRQASEEDLAHVDGVGPTIAAALKEWFAEDWHREIVDRWAAAGVRMEDERDESMPR
TLEGLTVVVTGSLPNFSRDEAKEAILVRGGKAAGSVSKNTSYLVAGESAGTKLDKAEQLG
VPVLDEDGFRRLLAGGPAALEGSADS
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacaggaccaggccccgcagaacagatcgccacccgcaccacggaacccgtcgag
ccggaggctgtcccgtccgactccgtccgcggggagtacgaggacctggtggacctggtc
aggaagtaccggttcgcgtactaccaggaagacgccccgctggtctccgatgccgaattc
gatgagctcttccgccgcctggaggagattgaggcgctccaccccgaactcgtggccaac
gattcgcccacgcaggaggtgggcggggaagtgtccgccgcattcgcagccgtggagcac
ctgcagcggatgtacagcctcgaggacgtcttttccctcgaagaactcgaagcctggctc
actaaagcggcagccggcatcgagaaactgggtaacggaaccctgcccgcagcctggctg
accgagcttaagatcgacggcctggcggtcaacctcctgtaccgcgacggaaagctggtc
cgcgccgccacccgcggcgatggaaccaccggtgaggacatcacccacaacgtcctgacc
atcaaggaaatcccgcaggagctccagggcagcgggtttccggcagagatggaagtccgg
ggcgaggtcttcatcccgtccaaggaattcgccgagttcaacgaggcactcattgaagcg
ggcaaggcgcccttggcgaacccccgcaacgcagcagcaggctccctgcggcagaaggac
ccggcagaaacggccaagcgcccgctgaagatgttcgtgcacggcatcggtgcacgggag
ggcctcgaggcccgcagccagtccgaaacctatgacctgctgaaggggtggggccttccc
gtcagcccctattccgaggtgctgggcagcctggacgaggtcctggaattcatcaagcgg
tacggggacaaacgccacaagctgctgcacgagatcgacggcatcgtcatcaaggtggat
gacttcgccacccagcgggcgctcggttacaccaccagggtgccgcggtgggctgtcgcc
tacaagtacccgcctgaggaagtgcacaccaaactgctggacatccaggtcaacgtgggc
cgcaccggccgcgtgacgccctttggcctcatggagccggtcaaagtggcgggctcgaca
gtggagatggccaccctccacaaccaggacgtggtgaaggccaaaggcgtgaaaatcggc
gatatcgtggtgctgcgcaaggccggcgatgtcatcccggagatcgtgggccccgtcctt
gccctccgggaccagcaggaccctccggtccgggatttcgtgatgcccaccgaatgcccc
tcctgcggcaccccgctggccccggccaaggagggcgacgtggacatccggtgccccaac
gccaagtcctgtccgtcccagctgcgggagcgggtgttccacctggccggccgcggagcc
ttcgacatcgaggcccttggctgggaggcggccatcgcactgacccagccggccgaaccc
gaggttcctccgctcacctcggaagctgcgctgttcgacctcacccccgaggacctggcc
ggcgtccggatccggcgcgagaaacggtcaaagggcgtccccaccggggaatacgaactt
gtgccctacttctacagcaagggcacggcgaagaccccgtccaagccaacggccaccacc
gagaagctcttcaaggaactggacaaggccaaggcccagccgctgtggcgggtgctggtg
gccctgtccatccggcacgtcgggccgcgggcctcgcgcgcgttggcgacggcgttcggc
agcatggacgccatccgccaggcgtccgaggaagacctggcacatgttgacggcgtaggc
cccaccatcgccgcagcgctgaaggaatggttcgctgaggactggcaccgggagatcgtt
gaccgctgggcagccgccggggtccggatggaggacgaacgcgacgagtccatgccgcgg
accctggaaggactgaccgtggttgtcaccgggtccctgccgaacttcagccgcgacgag
gccaaggaagccatcctggtcaggggaggcaaggcggcaggttcggtgtccaagaacacc
agctacctggtggccggcgaaagcgccggcaccaaactggacaaggccgagcagctcggc
gttcccgtgctggacgaggacggcttccgccggctcctggccggcggccccgccgccctg
gaaggaagcgccgactcatga
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