Pseudoalteromonas sp. SM9913: PSM_A1928
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Entry
PSM_A1928 CDS
T01374
Symbol
nth
Name
(GenBank) endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
psm
Pseudoalteromonas sp. SM9913
Pathway
psm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSM_A1928 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psm03400
]
PSM_A1928 (nth)
Enzymes [BR:
psm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PSM_A1928 (nth)
DNA repair and recombination proteins [BR:
psm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PSM_A1928 (nth)
Prokaryotic type
PSM_A1928 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ADT68852
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All DBs
Position
I:2065083..2065715
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AA seq
210 aa
AA seq
DB search
MNKEKRYQILTRLRDDNPHPETELEYSSPFELLVAVTLSAQATDVGVNKATRKLFPVANT
PQAILDIGHDTLRDYIKTIGLFNSKAANVYKMCQILVDQHNGEVPENREALEALPGVGRK
TANVVLNTAFGWPTIAVDTHIFRVSNRTKLAMGKDVVAVEQKLEKVIPKEFKVDVHHWLI
LHGRYVCTARKPKCGSCIIEDLCEFKDKTE
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaaaaacgttaccaaatacttactcgcttgcgcgatgacaacccacatcct
gaaacggagcttgaatattcaagcccgtttgagttgctagttgccgtaacactctcagca
caagccaccgatgtaggggtaaataaagccacccgtaaactctttccggttgctaataca
ccgcaagctattttagatattggccacgacacactgcgtgattacattaaaaccatcggt
ttgtttaattccaaagccgctaatgtttacaaaatgtgccaaatactggttgatcagcat
aacggtgaagtgcctgagaatcgtgaagcgctcgaagccctgcctggcgttggccgtaaa
acagccaatgtggtactgaacaccgcttttggctggccgacaattgcagttgatacgcat
atattccgtgtatcaaaccgtactaagcttgccatgggtaaagacgtggtagccgttgaa
caaaagcttgaaaaagtgatccccaaagaatttaaagtagacgtacatcactggctcatt
ttacatggacgttatgtttgtacagcccgcaaaccaaaatgcggcagttgtataattgaa
gacttgtgtgagtttaaagataagactgagtaa
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