Pseudoalteromonas sp. MT33b: H3302_05705
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Entry
H3302_05705 CDS
T10969
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psmb Pseudoalteromonas sp. MT33b
Pathway
psmb03030
DNA replication
psmb03410
Base excision repair
psmb03420
Nucleotide excision repair
psmb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H3302_05705 (ligA)
03410 Base excision repair
H3302_05705 (ligA)
03420 Nucleotide excision repair
H3302_05705 (ligA)
03430 Mismatch repair
H3302_05705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psmb03032
]
H3302_05705 (ligA)
03400 DNA repair and recombination proteins [BR:
psmb03400
]
H3302_05705 (ligA)
Enzymes [BR:
psmb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H3302_05705 (ligA)
DNA replication proteins [BR:
psmb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H3302_05705 (ligA)
DNA repair and recombination proteins [BR:
psmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H3302_05705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H3302_05705 (ligA)
MMR (mismatch excision repair)
DNA ligase
H3302_05705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H3302_05705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
RNA_ligase
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QMW15588
LinkDB
All DBs
Position
1:1236349..1238370
Genome browser
AA seq
673 aa
AA seq
DB search
MSSPIFEQISQLRAQLEEHNHNYYVLDAPSIPDAEYDRLMRELSSLEQANPEFQSPDSPS
QKVGGAALDKFEQVTHQVPMLSLDNAFSQEEFAAFNRRIKERVMDTRELTFCCEPKLDGL
AVSIIYRNGVLVQAATRGDGMVGENITQNVKTIRNVPLKLRGNDFPAELEVRGEVFMDSA
GFAKLNSDAEKRGEKVFVNPRNAAAGSLRQLDSKVTAKRPLMFYAYSTGLVADGQLPEDH
YQQLAKLTDWGLPLCPETKLVEGQQAALDYYQDILARRSELAYEIDGVVIKVNDKKLQER
LGFVARAPRWAIAFKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH
NGDEIARLGVKIGDTVIIRRAGDVIPQITQVVLERRPESAREIVFPTTCPICDSHVERIE
GEAVARCTGGLVCQAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQ
GHFESLERMGPKSAKNLVNALQEAKQTTLAKFLYSLGIREVGEATAQNLANHFLTLEKIT
QASVDALTEVSDVGEIVAKHVRGFFSEEHNMAVVNALIEQGIHWPALNAPSAEKQPLAGL
TYVLTGTLSELNRNDAKARLQALGAKVSGSVSAKTNALIAGEKAGSKLTKAQELGIEVLT
EADLIALLSEHNG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtccagccctatctttgagcaaattagtcaactacgtgcccagttagaagagcataat
cataattattatgtgctggatgcacccagtattcccgatgctgaatatgaccgcttaatg
cgagagctaagtagcttagagcaagcaaatcctgagtttcagagtcctgattcacccagc
caaaaagtgggtggggccgcgcttgataaatttgaacaagtaacgcaccaagttcctatg
ttgtcgcttgataatgctttttcacaagaagagtttgcggcgtttaatcgccgaattaaa
gagcgcgtgatggatacccgcgaactcacattttgctgcgaaccaaagcttgatggttta
gctgtgtcgattatttatcgcaatggtgtgctggttcaagctgcaacacgtggcgatggt
atggtgggtgaaaacattacacaaaacgtgaaaacgattcgtaatgtgccattaaaactt
cgcggcaatgactttcctgctgaacttgaagtacgcggcgaagtatttatggatagtgca
ggctttgcaaaactgaacagcgacgctgaaaagcgaggcgaaaaggtatttgttaacccg
cgtaatgctgcggctgggagtttacgtcagctcgattctaaggtaacggcaaaacgccca
ttaatgttttatgcatacagcacagggctggtggctgatgggcaattgccagaagatcat
taccaacaactggcaaaattgactgattggggattaccactttgccctgaaactaagtta
gttgaaggtcaacaggcggcgcttgattattatcaagatatcttagcgcgccgaagtgag
cttgcctatgaaattgacggtgtggttattaaggtcaacgacaaaaagctccaagagcgc
ttgggctttgttgctcgcgctcctcgttgggctattgcgtttaagtttccagctcaagaa
gaaattacacaacttttagatgttgaattccaagtagggcgaacgggtgcaattacaccg
gtagcacgtttagagcctgtatttgttggcggagtgactgtatcgaatgccactttacat
aatggggatgaaatagcccggttaggcgttaaaattggcgatacggtgattattcgccgc
gcaggcgatgtaatccctcaaattacccaagtggtactggagcgtcgtcctgagagtgca
agagagattgtattcccaaccacttgtccaatttgtgactcgcatgtagagcgtatcgag
ggtgaagcagttgcacgatgcaccggtgggttggtgtgccaagcacaacgtaaacaagca
attaagcattttgcttcacgtaaagcgcttgatattgacgggttaggagacaaaattgtt
gaccaattagtcgatcgtgagcttatcaaaacgcctgctgatttatttattttaaaacaa
ggtcactttgagtcacttgaacgaatggggccaaagtctgctaaaaatttggtgaatgcg
ctgcaagaggcaaagcaaactaccttagctaaatttctttactctttgggtattcgtgaa
gtcggtgaagcaacagctcaaaacctcgctaatcactttttaaccttagagaaaattact
caagccagtgttgatgcactaacagaagtgagcgatgtgggtgaaattgttgctaagcat
gtgcgcgggttctttagtgaagagcacaacatggctgttgttaatgcgttaatagagcag
ggaattcattggccagctttaaatgcaccaagcgctgagaagcaacctttagctgggctg
acgtatgttttaacaggcaccttaagtgagcttaatcgaaacgatgcgaaagcgcgtctg
caagctctcggcgcaaaagtatcggggagtgtgtcggctaaaacaaatgcccttattgca
ggtgaaaaagcaggctctaaactaacaaaagcacaagagttgggtattgaggtgcttaca
gaagccgatttaattgctttattaagtgaacacaatggatag
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integrated database retrieval system
