Pseudomonas sp. MM213: K5R88_30350
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Entry
K5R88_30350 CDS
T11312
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psmd Pseudomonas sp. MM213
Pathway
psmd03030
DNA replication
psmd03410
Base excision repair
psmd03420
Nucleotide excision repair
psmd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K5R88_30350 (ligA)
03410 Base excision repair
K5R88_30350 (ligA)
03420 Nucleotide excision repair
K5R88_30350 (ligA)
03430 Mismatch repair
K5R88_30350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psmd03032
]
K5R88_30350 (ligA)
03400 DNA repair and recombination proteins [BR:
psmd03400
]
K5R88_30350 (ligA)
Enzymes [BR:
psmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K5R88_30350 (ligA)
DNA replication proteins [BR:
psmd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K5R88_30350 (ligA)
DNA repair and recombination proteins [BR:
psmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K5R88_30350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K5R88_30350 (ligA)
MMR (mismatch excision repair)
DNA ligase
K5R88_30350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K5R88_30350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UCP10044
LinkDB
All DBs
Position
6701668..6704025
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAKTRILELRAELDQHNYRYHVMDEPSIPDAEYDRLFHELKALEAANPDLITSDSPTQ
RVGSAALSAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGTGWPATLEVRG
EVFMSKAGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSA
EIAGTHIGNLKQLQAWGMPISRELKLAHGIDECLDYYRDIGERRNSLAYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVMERRPENARPVQIPEQCPVCGS
HVERTQLVKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVSSPADLYALTFEQIVDLEGFAELSSKNLLSAIEDSKKPGLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDAHNQQVIADLLKHGL
QIQDQGELGAEFAASTTLGGFLDKLHIPSVGPGGAQKLAEKFGSLEGVFSADWLDMRQAL
PEKQANSVREFFAIAENRQIAEAAEKQLRDFGMHWQSEKKVVEGLPLAGQTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVAFLSA
HGISV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaaaacccgcattctagagctgcgcgctgagctggatcagcacaactat
cgctaccacgtgatggacgagccgagcattccggacgccgaatacgaccggttgttccat
gagctcaaggccctcgaagcagccaaccctgacctcatcaccagcgactcgccaacccag
cgcgtcggcagcgcggcgctgtcggcgttcacccaggtgcgtcacgaagtgccgatgctc
agcctcggcaacgccttcgaagaaaccgacatgcgcgagttcgatcgtcgggtgactgaa
ggcctcgacctgccagccggcgacttgtttggcggcggggcggcggtggagtacagctgc
gaaccgaagctcgatggcctggcggtcagcctgctttatcaggacggtgtgttggtgcgc
ggcgcaacgcgtggtgacggcaccaccggtgaagacatcagtgtcaacgtacgcaccgtg
cgtaatattccgctcaaactgcaaggcaccggctggccggcgaccctggaagtgcgcggc
gaagtgttcatgtccaaggccggtttcgaacggctcaacgccacgcagctggaagtcggc
ggcaagaccttcgccaacccgcgcaacgcggcggcgggcagcttgcggcagctggattcg
aagatcactgccaaccgtccgctggaattctgctgctacggcatcggccaggtttcggcg
gagattgccggcactcacatcggcaatctgaagcagcttcaggcatggggcatgccgatc
agtcgcgagctgaaactggcacacggcatcgatgaatgcctggattactaccgcgacatc
ggtgagcgccgcaacagcctcgcctatgaaatcgacggcgtggtgttcaaggtcaacagc
atcgcctcccaacgtgaattgggcttccgcgcccgcgaaccgcgctgggcgattgcccat
aaattcccggcgatggaagaactcaccgaattgctcgacgtggaattccaggtcgggcga
accggtgccgtaacgccggtggcgcgcttgaaaccggtcaaggtggcgggcgtcaccgtg
gccaacgcgacgctgcacaacatggacgaagtggcgcgtctggggctgatgatcggcgac
accgtgatcatccgccgcgcgggcgacgtgattccgcaggtggtgcaagtggtcatggag
cgccgcccggaaaacgcacggccagtgcagattcctgaacagtgcccggtgtgcggttcg
catgtcgaacgcacacaattggtcaagcgcagcaaggggcgcgagaccatcagcgagggc
gcggtgtatcgctgtgtcggtcgcctggcctgcggtgcgcaactcaagcaggcgatcatt
cacttcgtttcccgtcgagcgatggacatcgaaggtttgggcgagaagagcgtcgagcag
ttggtggacgaaggcctggtgagttcgccggccgatctgtacgccctgacgttcgagcaa
atcgtcgatctcgaaggctttgccgagctgtcgagcaagaacctgctcagcgccatcgaa
gacagcaaaaagccgggcctggcgcgcttcatctacgccctcggcattcccgatgtcggc
gaagagacggccaaggtgctggcacgctccctcggctcgctggagcgggttcagcaggcg
ttgccgcaagtgctcacgtacttgccggatgtcggtctggaagtggctcacgagattcac
agcttcttcgaagatgcgcataaccagcaggtgatcgccgatctgctcaagcatggcctg
cagattcaggatcagggcgagttgggcgccgagtttgcggcgagcaccacgctgggcggt
ttcctcgacaagctgcacattccttcggtcgggccgggcggggcgcagaagctggcggaa
aaattcggttcgctggaaggtgtgttttctgctgactggctggatatgcgccaggccttg
ccagagaaacaggccaattcggttcgcgagttctttgccatcgccgaaaatcgtcagatc
gctgaggccgctgaaaagcagctacgcgatttcggcatgcattggcagagcgagaagaag
gtcgtcgaaggcttgccgctggcagggcagacctgggtgttgaccggttcgctggaattg
atgagccgcgatgttgccaaggacaagctcgaaagcctcggcgccaaagtggccggttca
gtgtcggccaagacccattgcgtggtggccgggccgggtgccggttcgaagttggccaag
gccaatgagctggggttgaaggtgctggatgaagaggcgtttgtcgcgtttttgagtgca
cacggtatttctgtgtga
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integrated database retrieval system
