Pseudomonas sp. ML2-2023-3: V6P94_11765
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Entry
V6P94_11765 CDS
T10712
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psml Pseudomonas sp. ML2-2023-3
Pathway
psml03030
DNA replication
psml03410
Base excision repair
psml03420
Nucleotide excision repair
psml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6P94_11765 (ligA)
03410 Base excision repair
V6P94_11765 (ligA)
03420 Nucleotide excision repair
V6P94_11765 (ligA)
03430 Mismatch repair
V6P94_11765 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psml03032
]
V6P94_11765 (ligA)
03400 DNA repair and recombination proteins [BR:
psml03400
]
V6P94_11765 (ligA)
Enzymes [BR:
psml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V6P94_11765 (ligA)
DNA replication proteins [BR:
psml03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V6P94_11765 (ligA)
DNA repair and recombination proteins [BR:
psml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V6P94_11765 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6P94_11765 (ligA)
MMR (mismatch excision repair)
DNA ligase
V6P94_11765 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V6P94_11765 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WWT73288
LinkDB
All DBs
Position
2538322..2540682
Genome browser
AA seq
786 aa
AA seq
DB search
MTAANTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEAEHPELVTADSPTQ
RVGSAALSAFTQVRHEVPMLSLGNAFDETDMREFDRRVSEGLDLPAGDLFGGGAEVEYSC
EPKLDGLAVSLLYQDGNLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPAVLEVRG
EVFMSKAGFERLNETQLAAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSE
EFSDTHIGNLKQLQQWGMPISHELKLARGIAECLDYYRDIGERRAALPYEIDGVVFKVNN
LASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNASLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVLERRPEDARAVHIPESCPVCGS
HVERTQLIKRSKGRETITEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVSSPADLYTLAFEQIVDLEGFAELSSKNLLQAIADSKRPTLARFIYALGIPDVG
EETAKVLARSLASLERVQRALPQVLTYLPDVGLEVAHEIHSFFSDAHNQQVIAQLLERGL
ELQDQGDLGAEFAASATLGGLIDKLHIPSVGPGGAQKLAEKFGSLEGVINADWLDMRQAL
PEKQAKAVREFFDHPENARLALEVEAQLRDFGMHWQSEKKAVEGLPLAGQTWVLTGSLEL
MSRDIAKDKLESLGAKVSGSVSGKTHCVVAGPGAGSKLVKANELGLKVLDEEAFVAFLAG
KGISIQ
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaatacccgcattttagagctgcgcgctgaactggatcagcataactac
cgttaccacgtactggatgaaccgagcattccggacgccgagtacgatcgcctgtttcgt
gagttgaaagccctggaggccgaacatccagagctggttaccgccgactcgccgacccag
cgcgtggggagtgcggcgctgtccgcctttactcaggtgcgtcacgaagtgcccatgctg
agtttgggtaacgccttcgatgaaaccgacatgcgcgagtttgatcgtcgtgtcagtgaa
ggtctggatttgcccgccggggatctgtttggcggtggcgccgaagttgaatacagctgc
gagccgaagctcgacgggctggcggtgagcttgctgtaccaggatggcaatctggtgcgc
ggcgctacccgaggtgatggcaccacgggtgaagatatcagtgtcaatgtgcgcaccgtg
cgcaatattcctttaaagctgcatggcagcggctggcccgcagtgttggaagtgcgcggc
gaagtgtttatgtccaaggccggctttgagcgtctcaatgagactcagctcgccgctggc
ggcaagaccttcgccaatccgcgcaatgcggcggcgggcagcttgcgtcagctggattcc
aagatcaccgccagccggccgctggaattttgctgctacggcctggggcaggtatccgag
gagttctctgacacccatatcggcaatctcaagcagttgcagcaatggggcatgcccatc
agtcatgagttgaaactggcccgcgggattgccgagtgcctggattactaccgtgatatt
ggcgagcgtcgagctgcgctgccttacgagatcgacggggtggtgttcaaggtcaacaac
ctggcgtcacaacgtgagttgggcttcagggcgcgcgagccgcgttgggccatcgcccac
aagttcccggctatggaggaactgaccgagttgctggatgtggagtttcaggtcgggcgc
accggtgcggtaacgcccgtggcgcgcctcaagccggtcaaggtggccggtgtgaccgta
tccaatgcaagcctgcacaacatggatgaagtggcccgtctggggctgatgattggcgac
acggtgattattcgccgtgcaggggatgtgattccccaagtggtgcaagttgtgctggag
cgtcgtcctgaagatgcccgtgcggtgcatattcctgaaagctgcccggtgtgtggctcc
catgtcgagcgcacgcagctgatcaagcgcagcaaaggccgtgaaaccatcaccgaaggc
gcggtttatcgttgtgtgggacgtctggcctgcggtgctcagctcaagcaggcgatcatt
cattttgtctcgcgccgtgcgatggacatagaaggcctgggcgaaaaaagcgtcgagcag
ttggtggatgaggggctggtgagttcgcctgccgatctttacaccctggctttcgagcag
atagtcgatcttgaaggctttgccgagttgtcgagcaagaacctgctgcaggccatcgcc
gacagcaagcgtccgacattggctcgctttatctacgcgctgggtattcctgatgtgggt
gaagaaactgccaaggtgctggcgcgctccctggcctctctggagcgggtacagcgtgcc
ctgccgcaagtgctcacctatttgcctgatgtcgggctggaagtggcgcacgaaatccac
agcttcttcagcgatgcgcataaccagcaggtgattgctcaattgctggagcgtggtctg
gaattgcaggatcagggcgacctgggtgccgagttcgcggccagtgcgacgctgggtggt
ctgatcgacaagctgcacattccttcggttgggccgggcggggcgcaaaagctggccgag
aaatttggctcgctcgaaggcgtgatcaatgcggactggctcgatatgcgtcaggcatta
cctgaaaagcaagccaaggccgtgcgtgagtttttcgatcaccctgaaaatgcccgtctg
gccctcgaagtcgaagcgcagctgcgggatttcggcatgcactggcaaagcgagaaaaag
gccgtggaaggcttgccgctggcgggtcagacctgggtgctgaccggctcgctggaattg
atgagccgggacattgccaaggacaagctggaaagccttggggccaaggtctcgggttcg
gtttccggcaagacccattgcgtggttgcgggtccgggagcgggctccaagctggtcaag
gccaatgaacttgggctcaaggtgctggatgaagaagcctttgtggcgtttctggccggg
aaggggatttcgatccagtag
DBGET
integrated database retrieval system
