Pseudomonas sp. ML2-2023-6: V6L79_11860
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Entry
V6L79_11860 CDS
T10713
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz03030
DNA replication
psmz03410
Base excision repair
psmz03420
Nucleotide excision repair
psmz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6L79_11860 (ligA)
03410 Base excision repair
V6L79_11860 (ligA)
03420 Nucleotide excision repair
V6L79_11860 (ligA)
03430 Mismatch repair
V6L79_11860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psmz03032
]
V6L79_11860 (ligA)
03400 DNA repair and recombination proteins [BR:
psmz03400
]
V6L79_11860 (ligA)
Enzymes [BR:
psmz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V6L79_11860 (ligA)
DNA replication proteins [BR:
psmz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V6L79_11860 (ligA)
DNA repair and recombination proteins [BR:
psmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V6L79_11860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6L79_11860 (ligA)
MMR (mismatch excision repair)
DNA ligase
V6L79_11860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V6L79_11860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Tla3_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WWT68617
LinkDB
All DBs
Position
2554484..2556841
Genome browser
AA seq
785 aa
AA seq
DB search
MTAANTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTADSPTQ
RVGSAALSAFTQVRHEVPMLSLGNAFDETDMREFDRRVSEGLDLPAGDLFGGGAEVEYSC
EPKLDGLAVSLLYQDGNLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPAVLEVRG
EVFMSKAGFERLNETQLAAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSE
EFSDTHIGNLKQLQQWGMPISHELKLAKGIAECLDYYRDIGERRASLPYEIDGVVFKVNN
LASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVLERRPADARPVQIPQNCPVCGS
HVERTQLIKRSKGRETITEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVSSPADLYTLAFEQIVDLEGFAELSSKNLLQAIADSKRPTLARFIYALGIPDVG
EETAKVLARSLASLERVQRALPQVLTYLPDVGLEVAHEIHSFFSDAHNQQVIAQLLERGL
ELQDQGELGAEFAASTTLGGLIDKLHIPSVGPGGAQKLAEKFGSLAGVIDADWLDMRQAL
PEKQAKAVREFFDSSENARIALEIEAQLRDFGMHWQSEKKAVEGLPLAGQTWVLTGSLEL
MSRDVAKDKLESLGAKVSGSVSGKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVVFLKE
QGILI
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaatacccgcattctagagctgcgcgctgaactggatcagcataactat
cgctaccacgtactcgacgagccgagtattccggacgccgagtacgaccgcctgtttcac
gagttgaaagcgctcgaagccgaacatccagagctggttactgctgattcaccgacccag
cgcgttggtagcgcggcgttgtcagccttcacccaggtgcgtcacgaagtacccatgctg
agcctgggtaatgctttcgacgaaaccgatatgcgcgagtttgatcgccgtgtcagtgag
ggtctggatttgcccgcaggtgatctgttcggtggcggcgccgaagttgaatacagctgc
gagcccaagctcgatgggctggcggtgagtttgctgtatcaggacggtaatttggtgcgt
ggcgctacccgaggtgatggcaccacgggcgaagacatcagcgtcaacgtgcgcaccgtg
cgcaatatcccgctcaagctgcatggcagcggctggcccgccgtgctggaagtgcgcggc
gaggtgtttatgtccaaggccggttttgagcgtctcaatgagactcagcttgccgccggt
ggcaagacctttgcaaatccgcgaaacgcggctgcgggcagcttacgccagctggattcg
aagattaccgccagccgcccgctggagttttgctgctacggcctggggcaggtatccgag
gaattctcggatacccatatcggcaatctcaagcagctgcagcaatggggcatgccgatc
agtcacgagctgaaactggccaaggggattgccgaatgcctggactactaccgtgatatt
ggcgagcgccgagcctcgctgccgtatgaaatcgacggcgtagtgttcaaggtcaataac
ctggcttcgcagcgcgagttgggctttcgggctcgcgagccgcgctgggccatcgctcac
aagtttccggcgatggaagagctgaccgagctgctggatgtcgagtttcaggtcggacgt
accggtgcagtaacccctgtggcgcgccttaagccggtcaaggtagctggtgtgaccgtg
tccaacgcgaccttgcacaacatggacgaagtggcgcgtctgggcctgatgattggcgat
acggtgattattcgtcgtgctggcgatgtaattccgcaagtggtgcaagtagtgctggag
cgtcgtcctgcagatgcgcgcccggtgcagatcccgcaaaactgtccggtgtgcggctct
catgtcgagcgcacacaactgatcaagcgcagcaagggccgcgaaaccatcaccgaaggc
gcggtgtatcgctgtgtcgggcgtttggcctgcggagcccagcttaaacaggcgattatt
cattttgtgtcgcgccgagcgatggacattgaaggcctgggcgagaaaagcgtcgaacag
ctggtggacgagggcctggtgagttcaccagccgatctttataccctggcgtttgagcag
atcgtcgacctcgaaggctttgccgaactgtcgagcaagaacctgctgcaggccattgcc
gacagcaagcgtccgaccttggcccgttttatctatgcattggggattcctgatgtaggc
gaagagactgccaaggtgctggcgcgttccctggcctcgctggagcgcgtgcagcgtgcc
ttgccgcaagtgctcacctacttgcctgacgtcgggctggaagtggcgcacgagattcac
agcttctttagtgatgcgcacaaccagcaggtgattgcacaactgctggagcgtggcctg
gagttgcaggatcagggcgagctgggtgccgagtttgcggccagcaccacattgggcggg
ctgatcgacaagttgcacatcccgtcggtagggccgggcggggcgcagaagctggccgag
aaatttggctcgcttgcaggcgtgatcgatgcagactggctcgatatgcgccaggccttg
cccgagaagcaggccaaggcggtgcgcgaatttttcgacagttctgaaaatgcccgtata
gcgctggaaatcgaagcccagctacgcgacttcggcatgcactggcagagcgagaaaaag
gctgtcgaaggcttgccactggctggtcagacctgggtgctgaccgggtcgctggagttg
atgagccgcgacgtcgccaaggacaagctggagagcctgggagccaaggtctcgggctcg
gtttccggcaagacccattgcgtggtggcggggccgggagcgggttccaagttggccaag
gccaatgagctggggctcaaggtgctggatgaagaagcctttgtggtgtttttgaaagag
cagggcattttgatctag
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integrated database retrieval system
