Pseudopedobacter saltans: Pedsa_0152
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Entry
Pedsa_0152 CDS
T01430
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psn
Pseudopedobacter saltans
Pathway
psn03030
DNA replication
psn03410
Base excision repair
psn03420
Nucleotide excision repair
psn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pedsa_0152
03410 Base excision repair
Pedsa_0152
03420 Nucleotide excision repair
Pedsa_0152
03430 Mismatch repair
Pedsa_0152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psn03032
]
Pedsa_0152
03400 DNA repair and recombination proteins [BR:
psn03400
]
Pedsa_0152
Enzymes [BR:
psn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pedsa_0152
DNA replication proteins [BR:
psn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pedsa_0152
DNA repair and recombination proteins [BR:
psn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pedsa_0152
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pedsa_0152
MMR (mismatch excision repair)
DNA ligase
Pedsa_0152
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pedsa_0152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Dna2
Auto_anti-p27
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADY50738
UniProt:
F0SDL1
LinkDB
All DBs
Position
192199..194211
Genome browser
AA seq
670 aa
AA seq
DB search
MSLFEIKEKIDALVTELNRHNYNYYQLAMPTISDYEFDQKLKELEKLEQENPAFIRIDSP
TQKVGGEITKTFKTVTHKWPMLSLGNTYNEQDLVDFDQRIRKIIGDNFEYVCELKFDGLS
ISLTYENGDLIRAVTRGDGTKGDEVTTNIKTIRTIPHRIKGEGILPSFEIRGEVFMHKAA
FEKLNQERIENGEQPFANPRNFASGTVKMQNSAEVAKRPLDCFLYFLYADKKPFPTHWES
LHAVEKWGFKISQESKLCKNLAEVFDFITYWDQERFKLSYDIDGIVIKVNSYAQQEELGF
TAKSPRWAISYKFKAAEVETELIEVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAN
EIERLDLYEGDTVLVEKGGEIIPKIMGVNLDKRKSDAQKIHYITHCPECGTELVRKVGEA
VHYCPNDEGCRPQIIGKMQHFISRKVMNIDGIGDETIETLYSKGFIRHISDIYNLKQDED
SLKQMDRFGEKSVTNMLLGIENSKQMPFEKVLFGLGIRYVGETVAKKLALHFKNIQNLQH
ASFEQLIEAEEIGERIAQSILEYFSDETHINEINKLITYGLQFEIEEKEVILQSESLLGQ
TFLISGVFENHSREELKKIIEDNGGKMLSSISAKLNYLVAGDNMGPSKLEKANKLNIPII
SEQDLFNLLG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttttcgaaataaaggagaaaatagatgcgctggtaaccgaactgaaccggcac
aattataactattatcagttggccatgccaactatttccgactatgagtttgatcagaaa
cttaaagaactcgagaagttagagcaggaaaatcccgcatttattcgtatagattctccc
acccaaaaggttgggggagaaattaccaaaacatttaaaacagttactcataaatggccc
atgctttctttgggcaatacttataatgaacaggatttggttgattttgaccaaaggata
aggaagattataggtgataattttgagtatgtatgtgagctgaaatttgatggtttatct
atcagccttacttacgagaatggggatttaattagagcggtaacacgtggcgacggaact
aagggagatgaggttacgacaaatatcaagacaatcaggacaattcctcatcgtataaaa
ggcgagggaattcttccttcgtttgaaataaggggtgaagtttttatgcataaagccgct
tttgagaaactaaatcaagagcgcatagaaaatggtgaacagccttttgcaaatcccaga
aattttgcatccgggacggttaaaatgcagaattctgcggaagtagccaaaagaccgtta
gattgttttctttattttttatatgctgacaaaaagccttttcctacacattgggaaagt
ttacatgcggtagaaaagtggggatttaagatttcacaggagtccaaactttgtaaaaat
ttagcagaggtttttgatttcattacttattgggatcaggaacgctttaagctttcttat
gatatagacggaatcgttatcaaagtgaatagttatgcgcaacaagaagagcttggtttt
acagctaaatctcctcgttgggccatcagctataaatttaaggctgcggaagtggaaacg
gaactgatagaagtaacctatcaggttgggcgtacaggagcagtgacacctgtggctaac
ttaaaaccggttcttttagcgggaacaacggttaaacgcgctacgctccataatgccaat
gaaattgaacgtttggatctttacgaaggtgataccgttttggtcgaaaaaggaggcgaa
attattcctaaaataatgggggttaatttagataagcggaaatcggatgcacaaaaaatt
cattatatcacccattgtccggaatgtggaactgaactggttagaaaagtgggagaagct
gttcattattgcccaaatgatgaaggttgcaggccacaaattatagggaaaatgcagcat
ttcattagccgtaaggtaatgaatattgatggaattggagacgaaactatagaaacttta
tattctaaaggattcattagacatatcagtgatatctataatcttaagcaagatgaggat
agtttgaagcaaatggaccggtttggggaaaaatctgtcaccaatatgttattgggtatt
gaaaattctaaacagatgccttttgagaaagtgctgtttggtttgggaataagatatgta
ggcgaaacggtagccaaaaaattagctttacattttaaaaatatccagaatttacaacat
gccagtttcgaacaattgatagaagcagaggaaattggagaaagaatagcgcaaagtatt
ttagaatatttttcagacgaaactcatattaatgaaataaataagttaattacatatggt
ttacagtttgaaattgaagaaaaggaagtaattttacaaagtgaaagtttgttgggacaa
acctttttgatatcaggtgtttttgaaaaccatagtagagaagagcttaaaaagattata
gaggataatggtggtaagatgctaagtagtatttccgccaaattaaactatcttgtagcc
ggagacaatatgggtccttctaaattggaaaaggcaaacaaacttaacattccaattata
agcgaacaggacttgttcaacttattgggataa
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