Pseudarthrobacter sp. NIBRBAC000502770: NIBR502770_03960
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Entry
NIBR502770_03960 CDS
T11331
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psnb Pseudarthrobacter sp. NIBRBAC000502770
Pathway
psnb03030
DNA replication
psnb03410
Base excision repair
psnb03420
Nucleotide excision repair
psnb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psnb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIBR502770_03960 (ligA)
03410 Base excision repair
NIBR502770_03960 (ligA)
03420 Nucleotide excision repair
NIBR502770_03960 (ligA)
03430 Mismatch repair
NIBR502770_03960 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psnb03032
]
NIBR502770_03960 (ligA)
03400 DNA repair and recombination proteins [BR:
psnb03400
]
NIBR502770_03960 (ligA)
Enzymes [BR:
psnb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NIBR502770_03960 (ligA)
DNA replication proteins [BR:
psnb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIBR502770_03960 (ligA)
DNA repair and recombination proteins [BR:
psnb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NIBR502770_03960 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIBR502770_03960 (ligA)
MMR (mismatch excision repair)
DNA ligase
NIBR502770_03960 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIBR502770_03960 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QDG87741
LinkDB
All DBs
Position
801628..803916
Genome browser
AA seq
762 aa
AA seq
DB search
MSTGPGPAEQTATRTTAPHQPEAVPTEAIREEYENLADLVRKYRFAYYQEDAPLVSDAEF
DSLFRRLEEIEALHPELVANDSPTQEVGGEVSAAFAPVQHLQRMYSLEDVFSLEELEAWL
NRAEASIERIGDGGAKAAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNLLT
IKEIPQELHGTGFPAEMEVRGEVFIPSKAFAEFNEALIEAGKAPLANPRNAAAGSLRQKD
PAETAKRPLKMFVHGIGAREGLAAGSQSETYGLLKEWGLPVSPYFEVLAARDDVLAFIKR
YGDQRHKLLHEIDGIVIKVDDFATQRALGNTTRVPRWAVAYKYPPEEVHTKLLDIQVNVG
RTGRVTPYGVMEPVKVAGSTVEMATLHNQDVVKAKGVKIGDIVVLRKAGDVIPEIVGPVL
NLRDQQDPPVRDFVMPTECPSCGTPLAPAKEGDVDVRCPNARSCPSQLRERVFHVAGRGA
FDIEALGWEAAIALTQPAEPDTPPLTSEARLFDLTPEDLAGVRIRREKKSKGVPTGEYEL
VPYFFSKGTAKSPSKPTATTQKLFTELEKAKTQPLWRVLVALSIRHVGPRASRALAQAFG
SMDRIRAASEEELAHVDGVGPTIAAALKEWFAEDWHVEIIDRWAAAGVRMEDERDESMPR
TLEGLTVVVTGSLPNFSRDEAKEAILLRGGKAAGSVSRNTSYVVAGESAGSKLDKAEQLG
IRVLDEDGFRQLLDGGPAALGDSADEDVTEEEAMEVVTGEDA
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacaggaccaggacccgcagaacagaccgccacccggaccacggcaccgcaccag
cccgaagcggtacccaccgaagccatccgcgaggagtacgaaaaccttgctgacctggtc
cggaagtaccggtttgcgtactaccaggaggacgcgcccctggtatcggacgccgagttc
gattcgctcttccgccgccttgaggagattgaggcgctgcaccccgagcttgtcgccaac
gattcacccacccaggaagtgggcggggaggtctccgccgccttcgcgccggtgcaacac
ctgcagcgcatgtacagcctggaggacgtcttctcgctggaggagctcgaggcctggctc
aaccgggccgaggccagcatcgaaagaattggcgacggcggcgcaaaggccgcctggctg
accgaactgaagatcgatggcctggcagtcaacctcctgtaccgcgacggcaagctggtg
cgcgctgccacccgcggcgacggcaccaccggcgaagacatcacccacaacctgctcacc
atcaaggaaatcccgcaggaactgcacgggaccggctttcccgcggaaatggaggtgcgc
ggcgaagtcttcatcccgtccaaggcgttcgccgagttcaatgaggccctgatcgaagcc
ggcaaggcgccgctggccaacccccgcaacgccgcggccggttcgctgcggcaaaaggac
ccggcggagacggccaagcggccgttgaagatgttcgtccacggcatcggcgcccgcgag
ggccttgccgccggcagtcagtcggaaacctacggactgcttaaggaatggggcttgccg
gtcagcccctacttcgaggtgctggccgcccgggacgacgtcctggccttcatcaagcgg
tacggggaccagcgccacaaactgctccacgaaatcgacggcatcgtcatcaaggtcgat
gatttcgccacccagcgggccctcggaaacaccacccgcgttccgcgctgggccgtggcg
tacaaatacccgccggaggaagtccacaccaaactgctggatatccaggtcaacgtgggc
cgcaccggccgggtcacgccctacggtgtcatggagccggttaaggttgccggatccacc
gtggaaatggccaccctgcacaaccaggacgtggtcaaggccaagggcgtcaagatcggc
gacatcgtcgtcctgcgcaaggcaggggacgtcatccccgaaatcgtgggcccggtcctg
aacctccgggaccagcaggacccgccggtgcgcgacttcgtgatgcccaccgagtgcccg
tcctgcggtaccccgctggcacctgcgaaggagggggacgtggatgtccgctgccccaac
gccaggtcctgcccgtcccagctgcgggagcgggtgttccacgtggccggccgtggtgcc
ttcgatatcgaggccctgggttgggaagcggccatcgcgctgacccagcctgccgaaccg
gacacccctccgctgacctccgaagcacggctgttcgacctcacccccgaagacctggcc
ggcgtccggatccggcgtgagaaaaagtccaaaggcgtccccaccggcgaatatgaactg
gtgccgtacttcttcagcaagggcacggccaagtccccgtccaagcccaccgccaccacc
cagaagctgttcacggaactggaaaaggccaagacgcagcccttgtggcgggttttggtg
gcgctgtccatccggcacgttggtccccgcgcatcacgggccctggcacaggcgttcggc
agcatggaccgcatccgcgccgcgtccgaggaggaacttgcgcatgtggacggtgtcggc
cccaccatcgccgccgcgctgaaggagtggttcgccgaggactggcacgtcgagatcatc
gaccgctgggccgccgcaggtgtacgcatggaagacgaacgcgacgagtccatgccgcgc
accctggaggggctgaccgtggtggtcaccggttccctgcccaacttcagccgtgacgag
gccaaggaagccatcctgctccgcggcggcaaggcagccggctcggtctccaggaacacc
agctatgtggtggccggcgaaagcgccggcagcaagctggacaaggcagagcaactgggc
atccgcgtcctggacgaggacgggttccggcaactgctcgacggcggcccggcagccttg
ggggactcggcggacgaagacgtgaccgaggaagaggcaatggaagtagtgactggggag
gacgcatga
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