KEGG   Pseudomonas sp. NC02: C0058_30295
Entry
C0058_30295       CDS       T10251                                 
Name
(GenBank) NAD-dependent DNA ligase LigB
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
psnc  Pseudomonas sp. NC02
Pathway
psnc03030  DNA replication
psnc03410  Base excision repair
psnc03420  Nucleotide excision repair
psnc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psnc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C0058_30295
   03410 Base excision repair
    C0058_30295
   03420 Nucleotide excision repair
    C0058_30295
   03430 Mismatch repair
    C0058_30295
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psnc03032]
    C0058_30295
   03400 DNA repair and recombination proteins [BR:psnc03400]
    C0058_30295
Enzymes [BR:psnc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     C0058_30295
DNA replication proteins [BR:psnc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     C0058_30295
DNA repair and recombination proteins [BR:psnc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     C0058_30295
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C0058_30295
   MMR (mismatch excision repair)
    DNA ligase
     C0058_30295
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      C0058_30295
SSDB
Motif
Pfam: OB_DNA_ligase DNA_ligase_aden RNA_ligase HHH_5 Nlig-Ia
Other DBs
NCBI-ProteinID: AUO26054
LinkDB
Position
6428770..6430455
AA seq 561 aa
MTSLMRWLFFLLLSFSPLTAWSQECPDWEADHARAQISTLAQQIRLWDDSYHRLGQSLIS
DELYDQASQRLAQWRRCFTPSAPVTDDPLGSARGTTAHPTPHTGLEKLLDDNAVQTWLRT
RQDVWIQPKVDGVAVTLVYRKGRLSRVISRGDGRLGQDWSASARRIPGIVQQLPEPVDLL
LQGELYWRLNDHVQAAKGGLGARGKVAGLMNRRQLSEAEAANIGLFVWAWPQGPDGFSER
LSQLAQWGFTDSGRYSHPIKDMTEAAHWRSYWYSHPLPFASDGVVLHQGQRAPAERWRVS
APYWAVAWKYPVAKALAHVRKVHFKIGRTGRITSILELEPVLLDDRKISRVSVGSLKRWR
ELDIRTGDQVSISLAGHVIPRLDRVILRSQPRAELQVPQARDFHPLSCWQLAPGCEEQLL
ARLTWLSGAQGLALPHIGRETWNTLIQAGLIDGLLDWLTLDEAELANIDGFGERSSARLL
DSLRSARQRPFAQWLMALGVPPTARNNLQGGWQTLAARDTQAWLAEDGIGPGRAAQLSAF
FRDPQVLALSETLRAAGIDGF
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgacgtcacttatgcgctggctgtttttccttttactcagcttctcgccgctcactgcg
tggtcgcaggagtgccccgactgggaggccgatcacgcccgggcccagatcagcaccctg
gcgcaacaaatccgcttgtgggatgacagctaccaccggctcggccagtcattgatcagc
gatgagctgtatgaccaggccagccagcgccttgcccaatggcgcaggtgtttcactccc
tccgccccagtcacggacgacccgctgggcagcgcgcgaggcacgaccgcccacccgacg
ccccacaccggcctggaaaaactgctggacgataacgccgtgcaaacctggctgaggact
cgccaggacgtgtggatccagcccaaggtcgatggcgtcgccgtcacgctggtttaccgc
aagggccggttgagccgggtcatcagtcgcggcgatggccggctgggccaggattggtca
gcctccgcccgccggattcccgggatcgtgcagcaactgcccgagcccgttgacctgctg
ttgcagggcgaactctattggcgactgaatgaccatgtgcaagctgccaaaggtggcctc
ggcgcccgcggcaaagtggccgggctgatgaatcgccggcagttgagcgaagccgaggcc
gccaatatcggtctgtttgtctgggcctggccccagggccccgatggcttttccgagcgg
ctgagccaactggcgcaatggggcttcaccgacagcgggcgctacagccacccgatcaag
gacatgaccgaagcggcgcactggcgcagctattggtacagccacccgctgcccttcgcc
agcgacggcgtggtattgcatcaaggccagcgggccccggccgagcgctggcgggtcagc
gcgccctactgggcggttgcctggaagtacccggtggccaaggcgctggcccatgtgcgc
aaggtgcacttcaagattggccgcaccgggcgcatcacctccatcctggagttggaaccg
gtactgctcgatgaccggaagatcagccgggtcagtgtcggttcgctgaaacgctggcgg
gaactggatatccgtactggcgaccaggtctccatcagcctcgccgggcacgtcatcccc
cgccttgaccgcgtcatcctgcgcagccagccacgggccgagttgcaggtcccgcaggcc
agggacttccaccccttgagttgctggcaactggccccgggttgcgaagaacagctgctc
gcgcgcctgacctggctgagcggcgcccagggcctggccctgccacacatcggccgcgaa
acctggaacaccttgatccaggccggcctgatcgacggcctgctcgattggttaaccctg
gatgaggcagagcttgctaacattgatggcttcggcgaacgcagcagtgcgcgtttactc
gacagcttgcgcagcgcccggcagcgaccgttcgcgcaatggctgatggccctgggagta
ccgcccacggcgcgcaacaatctacaaggcggctggcaaaccctggccgccagagacact
caagcctggctggccgaagacggcataggcccgggtcgcgcggcgcaactgagcgctttt
tttcgcgacccgcaggtactggccttgagtgaaacattacgggctgccgggatagatggt
ttttga

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