Pseudarthrobacter sp. NIBRBAC000502771: NIBR502771_19080
Help
Entry
NIBR502771_19080 CDS
T06121
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psni
Pseudarthrobacter sp. NIBRBAC000502771
Pathway
psni03030
DNA replication
psni03410
Base excision repair
psni03420
Nucleotide excision repair
psni03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIBR502771_19080 (ligA)
03410 Base excision repair
NIBR502771_19080 (ligA)
03420 Nucleotide excision repair
NIBR502771_19080 (ligA)
03430 Mismatch repair
NIBR502771_19080 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psni03032
]
NIBR502771_19080 (ligA)
03400 DNA repair and recombination proteins [BR:
psni03400
]
NIBR502771_19080 (ligA)
Enzymes [BR:
psni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NIBR502771_19080 (ligA)
DNA replication proteins [BR:
psni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIBR502771_19080 (ligA)
DNA repair and recombination proteins [BR:
psni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NIBR502771_19080 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIBR502771_19080 (ligA)
MMR (mismatch excision repair)
DNA ligase
NIBR502771_19080 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIBR502771_19080 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QDG64200
LinkDB
All DBs
Position
complement(4090126..4092414)
Genome browser
AA seq
762 aa
AA seq
DB search
MSTGPGPAEQTATRTTAPHQPEAVPTEAIREEYENLADLVRKYRFAYYQEDAPLVSDAEF
DSLFRRLEEIEALHPELVANDSPTQEVGGEVSAAFAPVEHLQRMYSLEDVFSLEELEAWL
NRAEASIEKIGDGGAKAAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNLLT
IKEIPQELHGTGFPAEMEVRGEVFIPSKAFAEFNEALIEAGKAPLANPRNAAAGSLRQKD
PAETAKRPLKMFVHGIGAREGLAAGSQSETYGLLKEWGLPVSPYFEVLAARDDVLAFIKR
YGDQRHKLLHEIDGIVIKVDDFATQRALGNTTRVPRWAVAYKYPPEEVHTKLLDIQVNVG
RTGRVTPYGVMEPVKVAGSTVEMATLHNQDVVKAKGVKIGDIVVLRKAGDVIPEIVGPVL
NLRDQQDPPVRDFVMPTECPSCGTPLAPAKEGDVDVRCPNARSCPSQLRERVFHVAGRGA
FDIEALGWEAAIALTQPAEPDTPPLTSEARLFDLTPEDLAGVRIRREKKSKGVPTGEYEL
VPYFFSKGTAKSPSKPTATTQKLFTELEKAKTQPLWRVLVALSIRHVGPRASRALAQAFG
SMDRIRAASEEELAHVDGVGPTIAAALKEWFAEDWHVEIIDRWAAAGVRMEDERDESMPR
TLEGLTVVVTGSLPNFSRDEAKEAILLRGGKAAGSVSRNTSYVVAGESAGSKLDKAEQLG
IRVLDEDGFRQLLDGGPAALGDSADEDVTEEEAMEVVTGEDA
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacaggaccaggacccgcagaacagaccgccacccggaccacggcaccgcaccag
cccgaagcggtacccaccgaagccatccgcgaggagtacgaaaaccttgctgacctggtc
cggaagtaccggtttgcgtactaccaggaggacgcgcccctggtatcggacgccgagttc
gattcgctcttccgccgcctcgaggagattgaggcgctgcaccccgaacttgtcgccaac
gattcacccacccaggaagtgggcggcgaggtctccgccgccttcgcgccggtggaacac
ctgcagcgcatgtacagcctggaggacgtcttctcgctggaggagctcgaggcctggctc
aaccgggccgaggccagcatcgaaaaaattggcgacggcggcgcaaaggcagcgtggctg
accgaactgaagatcgatggcctggcagtcaacctcctgtaccgcgacggcaagctggtg
cgcgctgccacccgcggcgacggcaccaccggcgaggacatcacccacaatctgctcacc
atcaaagaaatcccgcaggaactgcacgggaccggttttcccgcggaaatggaggtgcgc
ggcgaagtcttcatcccgtccaaggcgttcgccgagttcaatgaggccctgatcgaggcc
ggcaaggcgccgctggccaacccccgcaacgccgcggccggttcgctgcggcaaaaggac
ccggcggagacggccaagcggccgttgaagatgttcgtccacggcatcggcgcccgcgag
ggccttgccgccggcagccagtcggaaacctacggactgctgaaggaatggggcctgccg
gtcagcccctacttcgaggtgctggccgcccgggacgacgtcctggccttcatcaagcgg
tacggggaccagcgccacaaactgctccacgaaatcgacggcatcgtcatcaaggtggat
gatttcgccacccagcgggccctcggaaacaccacccgcgttccgcgctgggccgtggcg
tacaaatacccgccggaggaagtccacaccaaactgctggatatccaggtcaacgtgggc
cgcaccggccgggtcacgccctacggtgtcatggagccggtcaaggttgccggatccacc
gtggaaatggccaccctgcacaaccaggacgtggtaaaggccaagggcgtcaagatcggc
gacatcgtcgtcctgcgcaaggcaggggacgtcattcccgaaatcgtgggcccggtcctg
aacctccgggaccagcaggacccgccggtgcgcgacttcgtgatgcccaccgagtgcccg
tcctgcggtaccccgctggcacctgcgaaggagggggacgtggatgtccgctgccccaac
gccaggtcctgcccgtcccagctgcgggagcgggtgttccacgtggccggccgtggtgcc
ttcgatatcgaggccctgggttgggaagcggccatcgcgctgacccagcctgccgaaccg
gacacccctccgctgacctccgaagcacggctgttcgacctcacccccgaagacctggcc
ggcgtccggatccggcgtgagaaaaagtccaaaggcgtccccaccggcgaatatgaactg
gtgccgtacttcttcagcaagggcacggccaagtccccgtccaagcccaccgccaccacc
cagaagctgttcacggaactggaaaaggccaagacgcagcccttgtggcgggttttggtg
gcgctgtccatccggcacgttggtccccgcgcatcacgggccctggcacaggcgttcggc
agcatggaccgcatccgcgccgcgtccgaggaggaacttgcgcatgtggacggtgtcggc
cccaccatcgccgccgcgctgaaggagtggttcgccgaggactggcacgtcgagatcatc
gaccgctgggccgccgcaggtgtacgcatggaagacgaacgcgacgagtccatgccgcgc
accctggaggggctgaccgtggtggtcaccggttccctgcccaacttcagccgtgacgag
gccaaggaagccatcctgctccgcggcggcaaggcagccggctcggtctccaggaacacc
agctatgtggtggccggcgaaagcgccggcagcaagctggacaaggcagagcaactgggc
atccgcgtcctggacgaggacgggttccggcaactgctcgacggcggcccggcagcattg
ggggactcggcggacgaagacgtgaccgaggaagaggcaatggaagtagtgactggggag
gacgcatga
DBGET
integrated database retrieval system
