Pseudomonas sp. NS1(2017): CI807_29150
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Entry
CI807_29150 CDS
T11105
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psns Pseudomonas sp. NS1(2017)
Pathway
psns03030
DNA replication
psns03410
Base excision repair
psns03420
Nucleotide excision repair
psns03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CI807_29150
03410 Base excision repair
CI807_29150
03420 Nucleotide excision repair
CI807_29150
03430 Mismatch repair
CI807_29150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psns03032
]
CI807_29150
03400 DNA repair and recombination proteins [BR:
psns03400
]
CI807_29150
Enzymes [BR:
psns01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CI807_29150
DNA replication proteins [BR:
psns03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CI807_29150
DNA repair and recombination proteins [BR:
psns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CI807_29150
NER (nucleotide excision repair)
GGR (global genome repair) factors
CI807_29150
MMR (mismatch excision repair)
DNA ligase
CI807_29150
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CI807_29150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
ASV40101
UniProt:
A0A223VXK5
LinkDB
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Position
complement(6272280..6274637)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ
RVGSAALSAFSQVKHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPAGDLFGGGAVVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS
DTHIGNLQQLQKWGMPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFKVNSIAS
QRELGFRAREPRWAIAHKFPALEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGVMIGDTVIIRRAGDVIPQVVSVVLERRPENARAVPIPESCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYKLKYEQIIDLEGFADISSKKLITAIENSKSPTLARFIYALGIPDVGEET
AKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPQECGL
QLQDQGDLSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKADWLDMRQAL
PEKQAKAVREFFDNADNASRALAIEQQLKDFGMHWNSEKKVVEGLPEAGHTWVLTGSLEL
MSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAK
HNITV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccacacccgcatcctcgaactgcgcgctgaactggatcagcacaattac
cgctaccacgtcctcgatgagccgagcattccggatgccgagtacgaccggctgttccat
gagctcaaggcactggaagccgagcacccagacctggtcacgcgcgactccccgacgcag
cgggtcggcagtgcggcgttgtcggcgttctcccaggtcaagcatgagatccccatgctc
agcctcggcaacgcctttgacgaaaccaccatgctggaattcgatcgtcgggtcaccgaa
ggcctcgacctgccggccggcgatctgtttggcggtggcgcggtggtggaatacagctgc
gaaccgaagctggatggcctggcggtcagcctgctgtatcaggacggtgagctggtacgc
ggcgccacccgtggcgacggcaccaccggtgaagacatcagcgtcaacgtgcgcaccgtg
cgcaatatcccgttgaaactgcacggcagcggctggccggcgaccctggaagtgcgtggc
gaagtgttcatgtccaaggccggtttcgagcggctcaacgcctcgcaactggaagtgggc
ggcaagactttcgccaacccgcgcaacgccgctgctggcagcctgcgtcagttggattcg
aagatcaccgccagccgacccttggaattctgctgctacggcgtgaccactgatatcagc
gacacccacatcggcaacctgcaacagttgcagaaatggggcatgcccatcagccatgag
ctgaagctggccaagggcatccaggattgcctggactactaccgcgatattggcgagcgc
cgtaacagcctgccgtatgagatcgacggcgtggtgttcaaggtcaacagcatcgcctcg
cagcgtgaactgggtttccgtgcccgcgaaccacgctgggccatcgcccacaaattccct
gccttggaagagctgactgaattgctcgacgtggagttccaagtcggccgtaccggcgcc
gtcacgccggtggcgcgccttaaaccggtcaaggtcgcgggtgtcaccgtgtccaacgcc
accttgcacaacatggatgaagtggcgcgcctgggcgtgatgatcggcgataccgtgatt
atccgccgcgctggggatgtgatcccacaagtagtttcggtggtgcttgagcgccgcccg
gaaaatgcccgtgcggtgccgatccccgagagctgcccggtgtgtggttcccacgtggag
cgcacgcaactggtcaagcgcagcaagggcaaggaaaccgtcagcgaaggcgcggtgtac
cggtgcgtcgggcgtctggcttgtggcgcgcagctcaagcaggcgatcatccatttcgtc
tcgcgccgcgccatggacattgatggcctgggtgacaagaccattgagcaattggtcgat
gaaaagctcatcggctcaccggccgacctctacaagctcaagtacgaacagatcatcgac
ctggaaggctttgccgacatttccagcaagaagctgatcaccgccatcgaaaacagcaaa
tccccgaccctggcgcgctttatctacgcccttggcattcccgacgtcggcgaggagacc
gccaaggtgctggcgcgctccctggcctccctggagcgcgtgcagaaggccttgccggaa
gtgttgacgtacttgccggacgtgggcctggaagtggcgcatgagattcatagtttcttt
gaagacagccataaccaggacgtgatcggcgcgctgctgtcgccgcaggagtgcggcctg
caactgcaggatcagggcgacctgagtgctgaattcgccgccagcaccaccctgggcggg
ttgctcgacaagctgcacgtaccgagcgtcggcccgggcgctgcgcagaagctggcagac
aagttcgtcaccctcgaaggcgtgatcaaggccgactggctggacatgcgccaggccctg
cccgagaaacaagccaaggctgtgcgcgagttcttcgataacgccgacaacgccagccgc
gccctggccattgagcagcagctcaaagacttcggcatgcattggaacagcgagaagaaa
gtcgtcgaaggcttgccggaggcggggcatacttgggtgctcactggctccctggagctg
atgagccgcgacgtggccaaggaaaaactcgaaagcctcggcgccaaggtggcgggttcc
gtgtcggcgaaaacccactgcgtggtggcggggccgggtgcgggttccaagctggccaag
gccagcgagctgggcctgaaggtattggacgaagaggctttcgtcgccttcctcgccaag
cacaacatcaccgtctga
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