Pseudomonas solani: PSm6_24700
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Entry
PSm6_24700 CDS
T09213
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psoa
Pseudomonas solani
Pathway
psoa03030
DNA replication
psoa03410
Base excision repair
psoa03420
Nucleotide excision repair
psoa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSm6_24700 (ligB)
03410 Base excision repair
PSm6_24700 (ligB)
03420 Nucleotide excision repair
PSm6_24700 (ligB)
03430 Mismatch repair
PSm6_24700 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psoa03032
]
PSm6_24700 (ligB)
03400 DNA repair and recombination proteins [BR:
psoa03400
]
PSm6_24700 (ligB)
Enzymes [BR:
psoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSm6_24700 (ligB)
DNA replication proteins [BR:
psoa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSm6_24700 (ligB)
DNA repair and recombination proteins [BR:
psoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSm6_24700 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSm6_24700 (ligB)
MMR (mismatch excision repair)
DNA ligase
PSm6_24700 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSm6_24700 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
DUF3701
RNA_ligase
HHH_2
TilS
Motif
Other DBs
NCBI-ProteinID:
BCD86063
LinkDB
All DBs
Position
complement(2711885..2713582)
Genome browser
AA seq
565 aa
AA seq
DB search
MPTPLPTRLLTLILCLPVFALADCPVWSDARAERELLALHKQLTGWEHSYHRDRLSPIPD
EIYDQVRARFAELRQCFPAAAVEDTKPLAGVDGKHPHPVAQTGLDKLANAKALQDWMRTR
NDLWVQPKVDGVAVTLVYRAGRLQQAISRGDGERGEDWTANARRIPAIPERLTTSSDLLL
QGELYWQLPGHIQAQAGSRGARGTVAGLMARHNLGAEEARGIGLFIWDWPGGPEGMLQRL
DGLARLGFTDAQRYTLPVRDAEQVAQWREHWYRSALPFASDGVVIRQSVAPAARTWQARP
PHWAIAWKYPFAQALAEVRRVEFLVGRTGRVTPRLLLSAVTLDDRRIQRVSLGSLEHWRD
LDIRPGDQVAIALAGLTIPRLESVVLRASERVTLEVPDQTALHALSCWRPTPGCQAQFLA
RLEWLSGRGGLAMRGVGPGTWERLLAAGKLDGLLDWLELEEEELQGIPGFAQRNAARFSQ
ASATAKRQGFQRWLKALGLPPSGDAPLDGGWERLARRTQAEWQATPGLGPVRAQQLEAFF
RHPEVQALRERLAAAGVEGFGTAPQ
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcccactcccctgcccacccgcctgctcaccctgatcctttgcctgcccgtcttcgcc
ctcgctgattgcccagtctggagcgatgcccgcgccgagcgcgaactgcttgccctgcac
aaacaattgaccggctgggaacacagctaccaccgcgaccgcctgtcacccatccccgac
gaaatctacgaccaggtgcgtgcgcgcttcgccgaactgcgccagtgcttccccgctgcc
gccgtggaagacaccaagccattggctggcgtcgatggcaagcacccgcaccccgtggcc
cagaccggcctcgacaagctcgcaaacgccaaggccctgcaggactggatgcgcacccgc
aacgacctgtgggtgcaacccaaggtggacggcgtggcggtcaccctggtctaccgggcc
gggcgcctgcagcaggccatcagccggggcgacggcgagcgcggcgaggactggaccgcc
aacgcccggcgcatccccgccattcccgagcgcctcaccacctccagcgacctgttgttg
caaggcgagctctactggcagctccccgggcacatccaggcccaggccggcagccgaggc
gcacgcggcacggttgccgggctcatggccaggcacaacctgggcgcggaggaggcccgg
ggcatcggcctgttcatctgggactggcccggtgggccggagggcatgctgcagcgcctg
gacggcctggcgcgcctgggcttcaccgatgcccagcgctacaccctgccggtacgggac
gccgagcaggtggcccaatggcgcgaacactggtaccgcagcgccctgcccttcgccagc
gacggcgtggtgatccgccagagcgtggcgcctgccgcgcgcacctggcaggcgcgacct
ccgcactgggccatcgcctggaaataccccttcgcccaggccctggccgaggtacggcgg
gtggagttcctcgtcggccgcaccggccgcgttaccccgcgcctgctgctgtcagcggtg
accctggatgatcggcgcatccagcgcgtcagcctgggttcactggagcattggcgcgac
ctggatatccgccccggtgaccaggtggccatcgccctggccgggctgaccattccgcgt
ctggaatcggtggtgctgcgcgccagcgagcgtgtgaccctggaggtgccggatcagaca
gccctgcacgccctcagttgctggcggccgacaccgggttgccaggcgcaattcctcgcc
cggctggagtggctgtccggccgcggcggcctggccatgcgcggtgtcggcccgggcacc
tgggagcgcctgctggcggctggcaagctggacggcctgctggattggctggaactggag
gaagaggagctgcagggcatacccgggtttgcccagcgcaacgccgcgcgcttcagccag
gcgagcgccacggcgaaacgccagggtttccagcgctggctcaaggccctgggcctgcca
cccagcggcgatgcgccactggatggtggctgggagcgattggcacgccgcacccaggcc
gagtggcaagccaccccgggcttggggccggtccgcgcacagcagttggaggcgtttttc
cgccacccggaggtgcaggccctgcgcgaacgcctggcggcggcgggcgtcgagggtttc
ggaacggcgcctcagtag
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integrated database retrieval system
