Porphyromonas somerae: CE91St14_12840
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Entry
CE91St14_12840 CDS
T08199
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psoe
Porphyromonas somerae
Pathway
psoe03030
DNA replication
psoe03410
Base excision repair
psoe03420
Nucleotide excision repair
psoe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CE91St14_12840 (ligA)
03410 Base excision repair
CE91St14_12840 (ligA)
03420 Nucleotide excision repair
CE91St14_12840 (ligA)
03430 Mismatch repair
CE91St14_12840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psoe03032
]
CE91St14_12840 (ligA)
03400 DNA repair and recombination proteins [BR:
psoe03400
]
CE91St14_12840 (ligA)
Enzymes [BR:
psoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CE91St14_12840 (ligA)
DNA replication proteins [BR:
psoe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CE91St14_12840 (ligA)
DNA repair and recombination proteins [BR:
psoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CE91St14_12840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CE91St14_12840 (ligA)
MMR (mismatch excision repair)
DNA ligase
CE91St14_12840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CE91St14_12840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
BRCT_2
PTCB-BRCT
HHH_3
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BDE82256
LinkDB
All DBs
Position
complement(1521470..1523539)
Genome browser
AA seq
689 aa
AA seq
DB search
MDLFQADYDRIAELRKLLERYEQEYYVLNAPTISDQEFDLLMKELEALEEQYPDRVTPDS
PTQRVGSEFWKEGKLGRVSQSEGSTFKHRYPMLSLANSYSWEDTLDFYRRVHQLAGKDAD
LVAELKFDGTSISIIYEGGVLSRALTRGDGTVGEDVTRAIQAMECVPKRLEGEHLPTYVE
VRGEILLPWAEFQRINKEREEEELPPFANPRNAVAGTIKTKEHVEAVIRSRRPTAFFYYL
LSDDEQWLPDLHHDRLALMRKLGLPVDEHSQVCDSLEGLKAYLDYWDTHRHQLPVATDGV
VVKVDSYALHALLGTTAKSPRWAMAYKFSAEKALTRLESVSYQVARTGVMTPVANLEPIE
LSGTTVSRATLHNADIISELDLHIGDLVMVEKGGEIIPKITSVRYDLRDEKTGAAVTMPK
VCPDCGTPLEREEGLSATFCPNEWGCPAQIEGKIEHFCSRKAMDINIGPKTIHLLCTLLG
VRSVADLYDLTEGELLRLPSFKEQKATNLLKSIEASKATPFDRVLFGLGIRQVGSTVAAH
LADHFRSLEALRSASREELLELEDIGPVIAENILRYFVESHNVETLERLERVGLQLRFTE
DTAPKPKGSLLEGMSIVVSGIFHTITRDELKELIVANGGKNVSSISGKTSLVIAGENMGP
SKREKAEKLGIEMMSEEQFFAKYDELKGR
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggatttatttcaggcagattatgatcggatagcagagcttcggaagcttctggagcga
tatgagcaggagtactatgtgctgaatgctcctaccattagtgaccaggagtttgacctc
ttgatgaaggagttggaggcgctggaggagcaatatcccgaccgtgtgactcccgattcg
cccacacagcgggtgggcagtgagttttggaaggagggtaaactggggagggtgagccag
tctgaaggatctacgtttaagcatcgctacccgatgctttcgcttgccaatagttactcg
tgggaggatacgctggacttctaccgacgggttcatcaattggcggggaaggatgccgac
ttggtggcggagctgaagttcgatggtacctctatctctattatctatgaagggggagtc
ttgagccgggctttgacgcgaggtgatggcacagtaggcgaggatgtgacgagggctatc
caagcgatggagtgtgtgccgaaaaggcttgagggcgagcatctacctacctatgttgag
gtgcgtggagagatcttactcccttgggcggaatttcagagaatcaataaggagcgtgaa
gaggaggagctccctccatttgctaaccctcgaaatgcagtggcgggaaccattaagacg
aaggagcatgtggaggcggtgatacgtagtcgtaggccgactgctttcttttattaccta
ctgagtgatgatgagcagtggttgcccgacctgcatcacgaccgcttggcgctgatgagg
aagctggggctccctgtggatgagcatagccaggtatgcgattcgctagagggtctgaag
gcttatctggactattgggacacccatcggcatcaactaccagtggcaactgatggagta
gtggtgaaggtggatagctatgcgttgcacgctcttttgggcaccacggcgaagtcgccc
cgctgggcgatggcctataagttttcggcagagaaggcgttgacgcgactagagtcggtc
agctatcaggtggcacggacgggggtgatgactcctgtggcgaatctggagccgatagag
ctctctgggactactgtttcgagggctacgctccataatgcagatatcattagtgaactg
gatctgcacatcggggacttggtgatggtggagaagggaggtgagattatcccgaaaatt
acctctgtgaggtacgaccttagggatgagaaaacgggcgctgcggtgacgatgcccaag
gtttgtccggattgcggaactccactggagcgtgaggaggggttgagtgccactttttgc
cccaatgagtggggctgtccagctcagatcgagggtaagatagagcatttctgtagccgt
aaggcgatggatatcaatatcggtcctaagaccattcatttgctttgcactttgctgggg
gtgaggagcgtggcggatctgtacgaccttactgagggggagcttcttaggttgcctagc
tttaaggagcaaaaggcgaccaatctgctcaagagtattgaggcctctaaggcgactccc
tttgatcgggtgcttttcggccttggcattcgtcaggtagggagtacggtggcggcacat
ctggcggatcactttcggtcgctggaggcgctgcggtcggcaagccgtgaggagcttttg
gagctagaggatattggtcctgtgattgcggagaatatcctgaggtattttgtggaaagc
cacaatgtggagacgttggagcgactggagagggtggggctacaattgcggtttacggaa
gacactgctccaaagccaaagggttcgctactggaggggatgagcattgtggtgagtggt
attttccataccattacacgtgacgaactgaaggagctgattgtggcgaatggaggtaag
aatgtttcgagtatcagcggaaagacgtcgctggtgatcgctggggagaatatgggacca
agtaagcgggagaaggctgagaaactaggaattgagatgatgagcgaagagcagtttttc
gctaagtatgatgaattgaaggggaggtaa
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