Phytophthora sojae: PHYSODRAFT_490630
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Entry
PHYSODRAFT_490630 CDS
T03459
Name
(RefSeq) putative non-intrinsic ABC protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
psoj
Phytophthora sojae
Pathway
psoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHYSODRAFT_490630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoj03019
]
PHYSODRAFT_490630
Messenger RNA biogenesis [BR:
psoj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PHYSODRAFT_490630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
SRP54
Zeta_toxin
ATP-synt_ab
AAA_29
AAA_28
NPHP3_N
AAA_16
AAA_23
AAA_30
AAA_22
RsgA_GTPase
AAA_15
MMR_HSR1
nSTAND3
Dynamin_N
VapE-like_dom
PduV-EutP
Motif
Other DBs
NCBI-GeneID:
20656596
NCBI-ProteinID:
XP_009525175
JGI:
Physo3_490630
UniProt:
G4Z774
LinkDB
All DBs
Position
Unknown
AA seq
317 aa
AA seq
DB search
MATNPAPPPPVALRGLNFAFAKVTIGGHLVNRLQYDPVTGAPIGDDDRVLRDVNLTLQPG
QRVLVVGGNGAGKSTLLSILAGKHLTADDTALIFGRDSFRDTTLNALRTFVSADWGQRAV
AFASHAMAYSADMAVEEMMVQLQSEHPERRAKLLKVLRIDPKWRLHRLSDGQRRRVQLFL
ALLRPSQLIVLDEVLGMLDIISRENVLAFLKEETEVRQATVLLATHIFDGTDVWASHVVY
VRRGSVGFFGPIEQCTDGHKVPMYKAVENWLRQELAEDDRIEREAVGTGGEFDLANAQNR
AGGYAAGRLGGVDIGSI
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaatcctgctccgccgcctcccgtggcgctgcgcggcctcaacttcgcgttc
gccaaggtgacgatcggcggccatctcgtcaaccgcctgcagtatgaccctgtcacgggc
gcccccatcggagacgacgaccgcgtcctgcgtgacgtgaacctgacgctgcagcccgga
cagcgggtgctggtcgtgggcggcaacggcgccggcaagagcacgctgctgagcatcctg
gcgggcaaacacttgacggcggacgacacggcgctcatctttggccgcgacagcttccgg
gacacgacgctgaacgccctgaggacgttcgtgagcgccgactggggccagcgagcggtg
gccttcgcgtcgcacgccatggcgtactcggccgacatggccgtggaggagatgatggtg
cagctgcagagcgagcacccggagagacgcgccaagctgctgaaggtgctgcgcatcgac
cccaagtggcgcctccaccgcctctcggacggccagagacgccgcgtccagctcttcctg
gcgctgctgagaccgtcccagctcatcgtgctggacgaggtgctgggcatgctcgacatc
atctcgcgcgagaacgtgctggccttcctgaaggaggagacggaggtgaggcaggccacg
gtgctgctggccacgcacatcttcgacggcacggacgtctgggcgtcccacgtggtgtac
gtgcgtcgtggcagtgtcggtttcttcgggcctattgagcagtgcacggacgggcacaag
gtcccgatgtacaaggcggtggagaactggctgcggcaggagctggccgaggacgaccgg
attgagagagaggcggtgggcaccggaggggagtttgatctggccaacgcccagaaccgc
gctggcggatacgcggccggacgactgggaggcgtagacattggcagtatttga
DBGET
integrated database retrieval system
