Papaver somniferum (opium poppy): 113327021
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Entry
113327021 CDS
T05758
Name
(RefSeq) ABC transporter I family member 20-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113327021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113327021
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113327021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_29
Arf
SMC_N
Zeta_toxin
AAA_30
nSTAND3
AAA_23
AAA
ORC-CDC6-like
VapE-like_dom
AAA_25
AAA_7
AAA_28
RsgA_GTPase
TsaE
Motif
Other DBs
NCBI-GeneID:
113327021
NCBI-ProteinID:
XP_026430449
LinkDB
All DBs
Position
Unknown
AA seq
326 aa
AA seq
DB search
MAAAATTIEINNLKFTYPGIDGHPPPNSTPLIEDFNLSLKSGERCLLVGSNGAGKTTILK
ILGGKHMVDQSMVRVLGRSAFHDTALTSSGDLCYLGGEWKRDVAFAGFEVSIQMDVSAEK
MIFGVAGVDPERRSELIKVLDIDLSWRLHKVSDGQRRRVQVCMGLLKPFKVLLLDEITVD
LDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPSHIVYVSRGKLQLAMPMEKVKE
TYKLSLLRTVESWLRKERDEDRKRRKERKAMGLPEFEQRVVGSNVVGAPAGSAARPLNNG
WAGGTLHSTIKGEGNFVFSSNRVLRN
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcagcaacaacaattgaaatcaacaatctgaaattcacatatccaggtatc
gatgggcatccaccaccaaattcaactccattaattgaagatttcaatctctctttgaaa
tctggcgaacgctgccttcttgttggatctaatggagctgggaaaacaacaattttgaag
atattaggtgggaaacatatggtggatcaatctatggttagggttcttgggagatcagct
tttcatgatactgctttgacatcctccggtgatctttgttatcttggtggagagtggaag
cgagatgttgcttttgctgggtttgaggtttcaattcaaatggatgtgtcggctgagaaa
atgatattcggggttgcaggagttgatcctgaaaggagatctgaactcattaaggtgtta
gatatagatctatcatggagattgcataaggtgtctgatggtcagagaagacgtgtgcaa
gtctgtatgggtctcctaaagccatttaaggttcttctccttgatgagataacggtggac
cttgatgtgctagcaagggctgaccttttaaagtttcttcgaaaagagtgtgaagagaga
ggagctacaattatatatgcgacccacatatttgatggtctagaggattggccttcacat
attgtttatgtttcccgcggaaaattgcaacttgcaatgccaatggagaaagtaaaagag
acttacaagctctccctgttgagaacggtagagagttggcttagaaaagaaagggacgag
gacagaaagagaaggaaagagaggaaggcaatgggccttccagaatttgaacagcgtgtt
gtgggaagcaacgtggttggggcaccagccggcagtgctgctcgtcccctgaacaatggt
tgggcaggtggaacgctacactccaccattaaaggtgaagggaattttgttttcagttcc
aacagagttctccgcaactga
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