Papaver somniferum (opium poppy): 113349504
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Entry
113349504 CDS
T05758
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113349504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113349504
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113349504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
AAA_15
nSTAND3
AAA_23
NACHT
SMC_N
AAA_22
AAA_28
AAA_24
PduV-EutP
AAA_5
AAA_25
AAA_18
AAA
AAA_30
AAA_33
Arf
SRP54
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
113349504
NCBI-ProteinID:
XP_026449260
LinkDB
All DBs
Position
2:154412252..154415234
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AA seq
291 aa
AA seq
DB search
MKVEEMKMLSNSVEVSAMNFSYEGQIPIFANFSLKITPGSRCLLVGANGSGKTTLLKILG
GKHMVGGKDVVRVLNSSAFHDTQLVCSGNLSYLGGSWSKTIGCAGEIPLQGDFSAEHMIF
GVEGVDLVRREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPFQVLLLDEVTVDLDV
VARLDLLDFFKEECEERGATIVYATHIFDGLETWATDLAYIQDGELRKSEKLSDLQELET
ATNLLSVVESWLRAETKRESKKLVAPVSSIRKASPFDNSPFRSSRHMAYYR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtggaagagatgaagatgttaagtaatagtgttgaagtatcagctatgaatttc
tcatatgaaggtcaaattccaatatttgccaatttcagtcttaagattactcctggttct
cgttgtcttcttgtcggtgccaacggatctgggaaaactacattgttgaagatattaggg
ggtaaacatatggttggaggaaaagatgtggttagggttttaaacagctctgcatttcat
gacactcagcttgtatgtagtggtaacttatcttaccttggaggctcttggagtaaaaca
ataggatgtgctggggagatcccactccaaggagatttttctgccgagcacatgatattt
ggagtcgaaggcgttgacctggttagaagagagaagttaatagatctgcttgacatcgat
ctgcagtggagaatgcataaagtatcagatgggcaacggcgtcgagttcaaatttgtatg
ggtcttctccatccgttccaggtactgttgctagatgaagttactgttgatctagatgtt
gttgcaaggttggatctacttgactttttcaaggaagagtgtgaagagagaggagcaacg
attgtgtatgcaacacatatttttgatggattagagacatgggcaacagatttggcatac
attcaggacggagagttgaggaaatcagagaagctttctgaccttcaagaactggaaact
gcaaccaatttgctttccgtggttgaatcttggcttcgcgctgaaaccaagcgcgaaagc
aagaaattagttgctcctgtttccagtattaggaaggcctctcctttcgataactctcct
ttcagatcgtcaaggcacatggcttactaccgctaa
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