Papaver somniferum (opium poppy): 113358662
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Entry
113358662 CDS
T05758
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
113358662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psom03400
]
113358662
Enzymes [BR:
psom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113358662
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
113358662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
113358662
NCBI-ProteinID:
XP_026458063
LinkDB
All DBs
Position
3:complement(217296638..217307075)
Genome browser
AA seq
1231 aa
AA seq
DB search
MSDQSAVKFSVLCSLFNWMQRSKTSSKKRSKFRKFLDNFCKTGDDYFASIRLILPSLDRE
RGSYGLKESVLANCLIDAVGLSKDSEDAKKLINWRKGGSKTGYNVGNFGLVAAEVLQRRQ
GMISGGLTIKELNNMLDRLASSENRGDKTAVLADLIQKTNAQEMKWIVMIILKDLKLGVS
EKSIFQEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEIGKAVRPQLALRISDATS
AWKKLHGKEVVVECKFDGDRIQIHKSGPKINFFSRNFLDHPEYEHAMSNVITQNILVDRC
ILDGEMLVWDTSTNRFAEFGSNQEIAKAAREGFASDRQLCYVAFDILYVGDTSVIHQSLK
ERHELLRKVVKPLKGRLEILVPDGGINAHRSSGEPCWSVIAQNVEMVDKFFKATVENRDE
GIVLKDLGSKWEPSDRSGKWLKLKPDYIHTGSDLDVLIIGGYYGSGRRGGEVAQFLVGLA
EPSASNTYPRRFISFCRVGTGLSDDELDALVTKLKPYFRKNEYPKKIPSFYELTNHSKER
PDVWIDSPEKSIILSITSDIRTVRSEVFAAPYSLRFPRIDRVRYDKPWHECLDLQSFVDL
VNSSNGNTRGADYGGSQYNKPKRAKPSSKGDKKKAPIVPSHFLRTDVSGVTEETPIFANM
MFYFINVPPTHSLDLFRKMVVEHGGQFSMNLNDSVTHCIAAERKGIKFEAAKRRGDVIHY
SWVLDCCLQKRLLHLQPKYFLHLGDSSKEKLQEEVDEFADSYYWDLDLADIRQLFNNINP
SEDLRNIAYYKKKYCPKTKWSRFQDCCIYFYSLKNSINSDWEFPLETSIKRLRLEVTMGG
GEVSEKLSYATHLVVLSVPGCDVEFDSILESFAAAEKHRLCSKKLHVVAYEWLEDSLEKG
QKLDEEKYNLKPDGLEESNIEMSEHEISDTSEKDGKSISEEPAVKNVRTSAASEVVGKRT
RGRPTLGNAKRGRTVASQARQTRVKGRTRPAKLDQSEPEKSASSDDTSNKDAIESKRGAQ
GVQGSITGLSQSRRTRAKMGAKHAKLDENELEVGAASENAPSNEATESDRGFHEIHETET
KEDKNNTKEKAEVFDVSQGDNISGTGSMELDGRNDYQDSEKVTGHIEISNSKGEEKIDVS
DKPEVTLDPLQAMLLNMIPSLGVKSEAYQSASGSEVPVRIDPSIEVKKTEASKPALEDEV
PPVRVDPDAGPVKKKKKVSYKDVAGELLKDW
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatcaaagtgcagtgaaattcagcgtactatgcagtttattcaattggatgcaa
agaagtaaaacatcatcaaagaaacgatcaaagttccggaaatttctagataatttctgt
aaaactggtgatgattacttcgcttcaatacgattaatattaccatcattagatagagaa
agaggaagttacggattgaaagaatcagtacttgctaattgtttgatcgatgccgttggt
ttatctaaagattctgaagatgctaagaaacttattaattggagaaaaggtgggagtaaa
actggttataatgttgggaattttggtcttgttgctgctgaggtactgcaaagaaggcaa
ggaatgatatctggtggattaacgatcaaggagttaaataatatgcttgatcgcttagca
tcaagtgagaatagaggtgacaagactgctgtacttgctgatcttatacagaaaacaaat
gcacaagaaatgaagtggattgtcatgatcattctaaaagatctaaaacttggagtcagt
gaaaagagcattttccaagaatttcatccagatgctgaagacttgtttaatgtcacttgt
gacttaaaactagtttgtgaaaagctaaaggaccgaagtcaacggcacaagcgccaggac
atagaaattggaaaagctgtacgccctcaactagctctgagaattagtgatgcaacttct
gcatggaaaaagcttcatggaaaagaagtcgtggttgagtgcaaatttgatggcgaccgc
attcaaattcataaaagtggacctaagataaacttcttctcaaggaactttcttgatcac
cctgaatatgagcatgcaatgtcaaatgtcatcacacaaaatatcttggttgataggtgc
atccttgatggtgaaatgttggtctgggacacatctacaaatcgttttgccgaatttggg
tctaatcaagaaattgcaaaggctgcaagagagggattcgccagtgatcgacagttatgc
tatgttgcatttgacattctttatgttggagatactagtgttatccatcagagcttgaaa
gagagacacgaacttcttcggaaagtggtaaaacctttaaagggccgtttggaaatatta
gtaccggatggtggtattaatgctcatcgttcttcaggggaaccttgctggtctgttatt
gcgcagaatgtggaaatggttgacaaattcttcaaagctaccgtggagaacagagatgaa
ggtattgtattgaaagaccttggatctaaatgggaacctagtgatcgaagtggaaagtgg
ttaaagttgaagcctgattacatacacactggttctgatctggatgttctgattataggt
ggatattatggttctggtcgtcgaggaggggaggttgctcagtttttggtgggtcttgcg
gaaccttcagcctctaatacctaccccagacggtttatatcattttgcagagttggtact
ggcctttctgatgacgagcttgatgcgttggttacaaaattgaagccctattttaggaag
aatgagtacccaaagaagataccgagcttttatgaactaaccaaccattcaaaagagagg
ccagatgtttggattgatagtcctgaaaagtcaatcatattgtccataactagtgatatc
cgaactgtcaggtctgaggtatttgctgcaccctacagtttgagatttcctcgcattgac
agggtgagatatgacaaaccttggcatgagtgccttgatctgcagtcttttgtggacttg
gtgaactcaagtaatggcaacactaggggggcagattatggaggctctcaatataataaa
ccaaagcgtgccaaaccctcgagcaagggagacaagaagaaggcccctattgtcccttct
catttcctccggacagatgtctccggcgtaacagaagaaacccccatatttgcaaacatg
atgttttatttcatcaatgtacccccaacccattctctggatctctttcgcaaaatggtg
gttgagcacggagggcagttctcgatgaacctaaacgattcagttactcactgcattgca
gcagaaagaaaaggtatcaaattcgaggcagcaaagcgtcgtggagacgttattcactac
tcatgggttctagattgttgcttacaaaagcgtcttctgcatttgcagccgaagtacttc
cttcatctcggtgactcatcaaaggaaaaattacaagaagaagttgatgaatttgctgat
tcttattactgggatcttgatcttgcagatattagacagctcttcaacaacataaatcca
tcagaagatctaagaaatattgcctactacaagaaaaagtattgcccgaagacaaaatgg
tcccgctttcaagattgctgcatttacttctactcattaaagaactctataaattctgac
tgggagttcccgttggagacttcaataaagagattgagacttgaagttactatgggtgga
ggtgaagttagcgagaaactttcttatgcgacccatctggtagtcctgtcagtacccggg
tgtgacgtagaatttgattcaatactggaaagctttgcagcagcagagaaacatcgatta
tgtagcaaaaagctgcatgttgtggcttacgaatggttagaggactctttggagaagggc
cagaaattggacgaggaaaaatacaacttgaagcctgacgggttagaagagtcaaatatt
gaaatgagtgagcatgaaatatctgatacttccgaaaaggatgggaagagtattagcgag
gaacctgcggtaaaaaatgtgagaacgtcagcagcatctgaggttgttgggaaacgaacg
agaggaagacccactcttggaaacgcaaaaagaggacgaactgttgccagccaagctcga
caaacgagggtaaaaggtcgaacaaggcctgctaaattagatcaaagtgaaccagaaaaa
agtgcttcctctgatgatacatcaaacaaagatgccatagagtcaaaacgaggggcccaa
ggagttcaaggaagcataaccggtttaagccaatctcgaagaacacgggcaaagatggga
gccaagcatgccaaattagatgaaaacgaacttgaagtcggtgctgcctcagaaaatgca
ccttctaacgaagccactgaatcagatagggggtttcatgaaattcacgaaacagagaca
aaagaagataaaaacaacacgaaagaaaaagcagaagtttttgatgtatcacaaggggac
aatattagtgggacagggtctatggaattggatggcagaaatgactatcaggacagtgaa
aaggtcacgggacatattgagatatctaactcgaaaggagaagaaaaaatagatgtttca
gataagccggaagtaacacttgatcctcttcaagcgatgttgttaaatatgataccaagc
cttggagtgaaatctgaagcatatcaatctgcatctggaagtgaggtaccggtaagaata
gatccaagcattgaagtgaagaaaactgaggcatcaaaacctgctctcgaagatgaggta
ccaccagtaagagtagatcctgatgcagggcctgttaaaaagaagaagaaagtcagttac
aaggatgtcgctggcgagctgcttaaggattggtaa
DBGET
integrated database retrieval system
