Pseudomonas sp. Os17: POS17_1910
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Entry
POS17_1910 CDS
T04177
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psos
Pseudomonas sp. Os17
Pathway
psos03030
DNA replication
psos03410
Base excision repair
psos03420
Nucleotide excision repair
psos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
POS17_1910 (ligA)
03410 Base excision repair
POS17_1910 (ligA)
03420 Nucleotide excision repair
POS17_1910 (ligA)
03430 Mismatch repair
POS17_1910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psos03032
]
POS17_1910 (ligA)
03400 DNA repair and recombination proteins [BR:
psos03400
]
POS17_1910 (ligA)
Enzymes [BR:
psos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
POS17_1910 (ligA)
DNA replication proteins [BR:
psos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
POS17_1910 (ligA)
DNA repair and recombination proteins [BR:
psos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
POS17_1910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
POS17_1910 (ligA)
MMR (mismatch excision repair)
DNA ligase
POS17_1910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
POS17_1910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BAQ73604
LinkDB
All DBs
Position
2092872..2095244
Genome browser
AA seq
790 aa
AA seq
DB search
MTAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLYHELKALEAEHPELVTSDSPTQ
RVGSAALSAFTQVRHEIPMLSLGNAFEEVDMREFDRRVVEGLDLPAGDLFGAGAAVEYSC
EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLEVRG
EVFMSKAGFERLNEAQLASGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSA
DIADTHIGNLQQLKQWGLPISRELRLAKGIDECLDYYREIGDRRNALAYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVVERRPQDARPVQIPESCPVCGS
HVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKTIEQ
LVDEQLIASPADLYQLKYEQIIDLEGFAEVSSNKLLKAIEDSKRPALARFIYALGIPDVG
EETAKVLARSLGTLERVQQALPQVLTYLPDVGLEVAHEIHSFFQDSHNRQVIGALLAADQ
CGLQLQDQGELGAEFAASTTLGGMLDKLNIPSVGPGAAQKLADKFGSLQGVIDADWLDMR
QALPEKQAKAVREFFDNPANAQLARAIEDQLTAFGMHWLSEKKVVEGLPLAGKTWVLTGS
LELMSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEAAFVAF
LSEHGVPLPA
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgctgaaacccgcattcttgagctgcgcgccgagctggatcaacacaactac
cgctaccacgtactggacgaaccgagcattccggacgccgagtacgaccgcctgtaccac
gagctcaaggccctggaggccgagcatccagagctggtcaccagcgattctccaacccag
cgggtcggcagtgcggcgctctcggccttcacccaggtacgccatgagatccccatgctc
agcctgggcaacgccttcgaagaagtcgacatgcgcgaattcgatcgtcgggtcgtcgag
gggctggacctgccggcgggcgacctgttcggtgctggcgccgcagtggagtacagctgc
gagcccaagctcgatggcctggcggtgagcctgttgtaccaggacggcgtgctggtgcgc
ggtgccacccgtggcgacggcaccacgggcgaagacatcagtgtcaacgtacgtaccgtg
cgcaacatcccgctcaagctgcaaggcagcggttggccggcgaccctggaagtgcggggt
gaggtcttcatgtccaaggccggcttcgagcgattgaacgaggcgcaactggcttcgggc
ggcaagaccttcgccaacccgcgcaacgccgctgcgggcagcctgcgtcagctggactcg
aagatcaccgccagtcggcccctggaattctgctgctacggtctgggccaggtcagcgcc
gacatcgccgacacccacatcggcaatctgcagcagctcaagcagtgggggttgcccatc
agccgcgagttgcgtctggccaagggcatcgacgagtgcctggattactaccgtgaaatc
ggcgaccgccgcaacgcgctggcctatgaaatcgacggcgtggtgttcaaggtcaacagc
atcgcctcccagcgcgagctgggcttccgtgcccgcgagccgcgctgggctattgcccac
aagtttccggccatggaagagctgaccgagctgctggatgtggagttccaggtcggccgc
accggtgcggttaccccggtagcccgtctgaagccggtgaaagtggcgggcgtgacggtg
tccaacgccaccttgcacaacatggatgaagtggcgcggctggggctgatgatcggcgac
acggtgatcatccgccgtgccggcgatgtgatcccgcaagtggtgcaggtggtcgtcgag
cgccgtccgcaggacgcccggccggtgcagattcccgaaagctgcccggtctgtggttca
catgtcgagcgcacccaactggtcaagcgcagcaaggggcgggaaaccgtgagcgagggc
gcggtgtatcgctgtgtcggtcgcctggcctgcggcgcccagctcaagcaggcgatcatt
cactttgtctcccgtcgcgccatggacatcgaaggcctgggggacaagaccatcgagcaa
ctggtggacgaacagctcattgcttcgcccgcggatctttaccagctcaagtacgaacag
atcatcgacctggaaggcttcgccgaagtctccagcaacaagctgctcaaggccatcgag
gacagcaagcgtccggccctggcacggttcatctatgccctgggcattcccgatgtcggc
gaggaaacggccaaggtcctggcgcgctccctgggcaccctggagcgtgtccagcaggcc
ttgccgcaggtcctgacctacctgccggatgtggggctggaggtggctcacgagatccac
agctttttccaggacagccataaccgccaggtgatcggtgccttgctggccgcggaccaa
tgtggcctgcagctgcaggatcagggcgagctcggggccgagttcgccgccagtaccacc
ctgggcggcatgctcgacaagctcaatatcccctcggtgggcccaggagccgcgcagaag
ctggcggacaagttcggctccctgcagggcgtgatcgacgcggactggctggacatgcgc
caggccttgccggagaagcaggccaaggcggtgcgcgagttcttcgacaacccggccaat
gcccaattggcccgggccattgaagaccagctcacggcgtttggcatgcactggctgagt
gagaagaaagtggtcgaaggcctgcctctggctggcaagacctgggtgctcaccggctcg
ttggagctgatgagtcgcgatgtggccaaggaaaagctggaaagcctgggggccaaggtg
gcagggtccgtgtcggcgaaaacccactgcgtggtggcaggacccggcgccggctccaag
ctggccaaggccaatgagctggggctcaaggttctggacgaagctgccttcgtggccttt
ctcagtgagcatggcgtccccctccctgcgtga
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integrated database retrieval system
