Prescottella soli: ABI214_22500
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Entry
ABI214_22500 CDS
T10552
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psow Prescottella soli
Pathway
psow03030
DNA replication
psow03410
Base excision repair
psow03420
Nucleotide excision repair
psow03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABI214_22500 (ligA)
03410 Base excision repair
ABI214_22500 (ligA)
03420 Nucleotide excision repair
ABI214_22500 (ligA)
03430 Mismatch repair
ABI214_22500 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psow03032
]
ABI214_22500 (ligA)
03400 DNA repair and recombination proteins [BR:
psow03400
]
ABI214_22500 (ligA)
Enzymes [BR:
psow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABI214_22500 (ligA)
DNA replication proteins [BR:
psow03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABI214_22500 (ligA)
DNA repair and recombination proteins [BR:
psow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABI214_22500 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABI214_22500 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABI214_22500 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABI214_22500 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
XBK10805
LinkDB
All DBs
Position
4834794..4836872
Genome browser
AA seq
692 aa
AA seq
DB search
MTNPSDAAVEPASAEDRERWQELAEVVRKHQFRYYVLDSPIISDGEFDQLLGELNALEER
HPDLRTPDSPTQLVGGGFSTEFTAVDHLERMLSLDNVFDYDELRTWASRVEAETGPDLHY
LCEVKIDGVALNLVYENGKLVRAATRGDGRTGEDVTLNARTIADIPETLTPSDEYPIPAL
LEVRGEVFFRLEDFAALNASLVQDGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGL
GRTEGFDPAGQYEAYTALAAWGLPVSTHTSRVVGIDAVVDKVKYWDEHRHDVEHEIDGLV
VKVDEMSLHRRLGSTSRAPRWAVAFKYPPEEATTKLLDIRVSVGRTGRVTPFAYMEPVLV
AGSTVSLATLHNASEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVDVRDGTETEFVMPTEC
PECDTTLAPAKEGDADIRCPNTRSCPAQLRERVFHVAGRGAFDIEVLGYEAATALLQAGV
IRDEGDLFSLTESELLEASLFRTKAGKLSANGRRLLDNLGSAKQQPLWRVLVALSIRHVG
PTAARALASEFGSLERIENAGVEELAAVDGVGGTIAAAVVDWFSVDWHRDIVEKWRAAGV
TMEDERDESIVRNLEGLSIVVTGSLDGFTRDEAKESILIRGGKAAGSVSKKTAFVVIGDA
PGSKAAKAEELGVPILDEAGFRRLLEHGPDGI
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacccgtccgacgccgcggtggaacccgcgagcgccgaggatcgcgaacgctgg
caggaactggccgaggtggtgcgcaagcaccagttccggtactacgtgctcgattcgccg
atcatctccgacggcgagttcgaccaactgctcggtgaactgaacgccctcgaggagcgg
cacccggatctgcggaccccggactcgccgacccagctcgtcggcggcgggttctcgacc
gagttcaccgccgtggaccatctcgagcgaatgctcagtctcgacaacgtcttcgactac
gacgagctccgcacctgggccagccgcgtggaagccgagaccggtccggacctgcactac
ctgtgcgaggtcaagatcgacggcgtcgcgctcaacctcgtgtacgagaacggcaagctg
gtccgcgccgcgacgcgtggtgacgggcgcaccggtgaggacgtcacgctcaacgcgcgc
acgatcgccgacatccccgaaaccctcacacccagtgacgaatacccgattccggcgttg
ctcgaggttcgtggcgaggtgttcttccgcctcgaggacttcgccgccctcaacgcctcc
ctggtccaggacggcaaggcgcccttcgcgaatccgcgcaactccgcggccggctcactg
cgacagaagaatccggccgtgaccgcccgacgtcggctcggcatgatctgccacggcctc
ggccgcaccgaggggttcgaccccgccgggcagtacgaggcatacaccgcactcgcggcg
tgggggctgccggtgtcgacgcacacgtcacgggtcgtcgggatcgacgccgtggtcgac
aaggtcaagtactgggacgagcaccgtcacgacgtggagcacgagatcgacggcctggtc
gtcaaggtcgacgagatgtcgctgcaccggcggctgggttccacgtcgcgggccccgcgg
tgggcggtcgcgttcaagtacccgccggaggaggccaccaccaagctgctcgacatccgc
gtcagcgtcggccgcaccggccgcgtcaccccgttcgcgtacatggagccggtgctggtg
gcgggctcgacggtgtcgctcgcgacgctgcacaacgcgtccgaggtcaagcgcaagggc
gtgctgatcggcgacacggtggtgatccgcaaggccggcgaggtgatcccggaggtgctc
gggcccgtcgtcgacgtgcgcgacggcaccgagaccgagttcgtgatgcccaccgagtgc
cccgagtgcgacacgaccctcgcgcccgcgaaggagggcgacgccgacatccgctgcccc
aacacgcgctcgtgcccggcgcagttgcgcgagcgcgtgttccacgtcgcggggcgcggt
gcgttcgacatcgaggtgctcggttacgaggcggccaccgcgctgctgcaggccggggtg
atccgcgacgagggcgacctcttctcgctcaccgagagcgaattgctcgaggcgtcgctg
ttccggacgaaggccggcaagctgtccgccaatggccgtcggctgctcgacaatctgggt
tcggccaagcagcagccgctgtggcgggtgctggtcgcgttgtcgatccggcacgtgggc
ccgaccgcggcgcgcgccctcgcgagcgagttcggcagcctcgagcggatcgagaacgcg
ggcgtcgaggagttggccgctgtggacggcgtcggcggcaccatcgcggccgcggtcgtc
gactggttcagcgtcgattggcaccgcgacatcgtcgagaagtggcgcgcggcgggcgtg
accatggaggacgagcgcgacgagtcgatcgtgcgcaatctcgagggactgtcgatcgtc
gtcacgggttcgctcgacggcttcacccgggacgaggcgaaggaatcgatcctgatccgg
ggcggcaaggcggccggttcggtgtcgaagaagacggcattcgtcgtgatcggcgacgcc
cccggctcgaaggcggccaaggccgaggaactgggcgtgccgatcctggacgaggcgggt
ttccggcgtcttctggaacacggaccggacggaatctga
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