Pseudomonas savastanoi pv. phaseolicola 1448A: PSPPH_1779
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Entry
PSPPH_1779 CDS
T00266
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psp
Pseudomonas savastanoi pv. phaseolicola 1448A
Pathway
psp03030
DNA replication
psp03410
Base excision repair
psp03420
Nucleotide excision repair
psp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSPPH_1779 (ligA)
03410 Base excision repair
PSPPH_1779 (ligA)
03420 Nucleotide excision repair
PSPPH_1779 (ligA)
03430 Mismatch repair
PSPPH_1779 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psp03032
]
PSPPH_1779 (ligA)
03400 DNA repair and recombination proteins [BR:
psp03400
]
PSPPH_1779 (ligA)
Enzymes [BR:
psp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSPPH_1779 (ligA)
DNA replication proteins [BR:
psp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSPPH_1779 (ligA)
DNA repair and recombination proteins [BR:
psp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSPPH_1779 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSPPH_1779 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSPPH_1779 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSPPH_1779 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
AAZ37705
UniProt:
Q48KR2
LinkDB
All DBs
Position
2081781..2084144
Genome browser
AA seq
787 aa
AA seq
DB search
MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQ
RVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSC
EPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRG
EVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQTSA
EIADTHIGVLETLKKWGMPVSHELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNN
LAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTCPVCGS
HVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGDKTIEQ
LVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVG
EETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECG
LQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISADWLDMRQT
LPEKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLE
RMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLT
ELGVAVD
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccgtcgaaacccgaatcctggaactgcgtgcagagctggatgagcacaactac
cgctatcacgtgctggatgagcccagcatcccggatgtcgagtacgaccgcctgtttcac
gaactcaaggcccttgaggcagaaaacccgcatctggtcacgccggattcgccgacgcaa
cgggtcggcagtgccgctttgtcggcgttcacccaggtgcggcacgaaatgccgatgctc
agcctgggcaacgctttcgaagaaaacgacatgctcgagtttgaccggcgggtaaccgaa
gggctggacttgcctgccggggacctgtttggtgcgggcagcaaggtgcagtacagctgc
gagcccaagctggacggtctggcagtcagcctgctgtatcgcgatggtgcgctggtacgc
ggtgcgacgcgtggggacgggaccaccggcgaggatatcagcgtcaatgtacgcaccgtg
cggaacatcccgctcaagctgaaaggcaagggctggccggatgtgctggaagtgcgcggc
gaagtgttcatgtccaaggcaggtttcgagcggctcaacgccagccagctggaaatcggc
ggcaagaccttcgccaacccgcgcaatgcggcggcgggcagcctgcgccagctggactcg
aaaatcactgccaatcgtccgctggaattctgctgctatggcctggggcagacttcggcg
gaaatcgccgacactcacatcggtgtgcttgaaacgttgaaaaaatggggcatgccggtc
agtcacgagctgaagctggcgaatggcgtcgaggagtgtctggactattaccgcgatatc
ggtgagcggcgcctgacgctgagctacgagatcgacggtgtggtgttcaaggtcaacaac
ctggctgcgcagcgcgaactgggctttcgcgcccgcgagccacgctgggcgatcgcccat
aaattccctgccatggaagagctgaccgagttgctggatgtcgagttccaggtaggccgt
accggtgcggtaacgccggtcgcgcgcctcaagccagtcaaggtggcgggtgtcatggtc
gccaacgccacgctgcacaacatggatgaagtggcgcggctcggcttgatgattggcgac
acggtgatcatacgtcgtgccggtgacgtgattcctcaagtggtgcaggtggttgccgag
cgccgccccgagaatgccagggcggtgcaggttccacagacctgcccggtgtgcggctcg
catgtcgagcgcacgcagttgatcaaacgcagcaagggcaaggaaaccgtcaccgaaggt
gcggtgtatcgctgcgtcgggcgtctggcctgcggtgcgcaactcaaacaggcgatcatc
cactatgtgtcacgtcgtgcgatggacattgaagggttgggagacaagaccatcgagcaa
ctggtcgatgaaaaactcattggctcgcccgccgacctgtacaagttgaaatacgaacaa
atcatcgacctggaaggctttgccgaaatttccagcaacaagctgctcaaggcgattgcc
gacagccgacagccgaccctggcgcgcttcatctatgccctgggcattcccgatgtgggc
gaggagacggccaaggtgctggcgcgttcgctggcgtctctggaccgcgtcaaacaggca
ttgccggaagtcctgacgtacctgccggatgtcggtctggaagtcgcctacgaaattcac
agcttcttcgaagacgagcacaaccgtaacgtcattgatgcgctgttgggcgaatgtgga
ctgcaattgcaggaccagggcgagttgggcgccgagtttgcggccagcactacgctcgaa
gggctgatcgacaaattacatatcccgtcggtagggccgggcgctgcacaaaaactggct
gacagattcggcacgctggaggccatcatcagcgccgattggctggacatgcgccagacg
ctgccggagaagcaggccaaatcagtccgtgatttcttcgacgacagcgcacatgccgag
cgtgcacgcgccatagaagcccagctcaaagacttcggcatgcactggcgcagcgagaaa
aaaaccgtcgaaggcttgccgctggccgggcagacctgggtactgacggggtcgctggaa
cgcatgagtcgcgacgtcgccaaggaaaaactcgaaagccttggtgccaaagtctccggc
tcggtctcggccaagacccacaccgtggttgcaggccccggtgcaggctcgaaactgacc
aaggccaacgagctggggctgaccgtactggacgaagatgcgctgctcaaacgcctgacc
gaactgggcgtggcggttgactga
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