Polyodon spathula (Mississippi paddlefish): 121295295
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Entry
121295295 CDS
T07273
Name
(RefSeq) short transient receptor potential channel 5-like
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pspa01009
]
121295295
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121295295
Protein phosphatases and associated proteins [BR:
pspa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121295295
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121295295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
121295295
NCBI-ProteinID:
XP_041075697
LinkDB
All DBs
Position
20:13168172..13256197
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AA seq
977 aa
AA seq
DB search
MAQLYYKKVNYSPYRDRIPLQIVRAEAELSPQEKAYLIAVEKGDYASVKQALEEAEIYYN
ININCMDPLGRSALLIAIENENLEIMELQLSHNIYVGDALLYAIRKEVVGAVELLLSHRK
PSGEKQVSSLMMDNQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCNCVE
CVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTCFRLGWELKELSKVENEFKAE
YEELSQQCKRFAKDLLDQARSSRELEIILNHRDDQSEELDPSECHDLAKLKLAIKYHQKE
FVAQPNCQQLLATLWYDGFPGWRRRHWAVKLLTCFTIGLLFPVFSVVYLLAPKSSLGLFI
KKPFIKFICHTASYLTFLFLLLLASQHIVRTDLHMQGPPPTIVEWMILPWVLGFIWAEIK
EMWDGGFTEYVHDWWNLMDFAMNSLYLATISLKIVAYVKYNGSRPREEWEMWHPTLIAEA
LFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYF
YYETSAAEEPHNCKGIRCEKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHKFTEFV
GATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTLPPP
FNIIVSPKSIWYLCVWLHRQLCPGKSRDEEHKKRENFKTFTERHADILIQNQHYQEVIRN
LVKRYVASMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRKPPRRTYSSSSDATL
KDEINDNGGSKSKSKNVSFNQADKKKDAVSVSALFRSMSGINIAEEKPKSNGFKKSFVKN
GNRLQRISTSKKDSFKRLGLLFSKMNGHVSEPSSSEPMYTISDGLIQPKHMWQDFKYSQS
EVHLNEVGKDEPAKVNGTDRLLPPICSNSLQCASSITASSSKLINSTEDVFHGWEGGCSV
LINNWKAGQEDNITTQL
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagctctactacaagaaggtgaactactctccttaccgggaccgcatccccctg
cagatcgtccgcgcagaggctgagctctctccccaggagaaagcctacttgatcgcggtg
gagaagggggattacgccagcgtgaagcaggccctggaggaggcagagatctactacaac
atcaacatcaactgcatggaccccctggggcgcagcgccctgctcatcgccattgagaac
gagaacctggagatcatggagctgcagctgagccacaacatctacgtgggggacgcgctg
ctctacgccatccgcaaagaggtggtgggggctgtggaactgctgctgagccaccgcaaa
cccagcggggagaagcaggtctcttccttaatgatggataaccagttttcagagttcact
cccgacatcacccctatcatgttggcagcccacaccaacaactatgagatcatcaagctc
ttggtccaacgcaaggtcaccatcccacggccgcatcagatccgctgcaactgcgtggag
tgcgtgtcgagctccgaggtggacagcctccgtcactcccgctcccgcctcaacatatac
aaggctctggccagcccctccctcatcgccctgtccagcgaggaccccatcctcacctgc
ttccggctgggctgggagctcaaggagctgagcaaggtggagaacgagttcaaggcggag
tacgaggagctttcccagcagtgcaagcgctttgccaaggatctcctggaccaggcccgc
agctcccgggagctggagatcatcctgaaccatcgggatgaccagagcgaggagctggac
ccgagcgagtgccacgacctggccaagctcaaactggccatcaaataccaccagaaagag
tttgtggcacagccgaactgccagcagctcctggcgactctgtggtacgacggattccct
ggttggcgccggcggcactgggctgtcaagctgctgacctgcttcaccatcggactgctc
ttcccggtcttctcagtggtttacctgctagctcccaagagcagcctgggcctgttcatc
aagaagccgttcatcaagttcatctgccacaccgcctcttacctgacattcctgttcctg
ctgctcctcgcctcccaacacattgtccgcacagacctgcacatgcagggccctccaccc
accattgtcgagtggatgatactgccctgggtgctgggattcatttgggctgaaattaaa
gaaatgtgggatggggggttcaccgagtatgtccatgactggtggaacctgatggatttc
gcaatgaactccctgtatctcgccaccatctcattaaagattgttgcatatgtcaagtac
aacggctctcgaccacgggaagagtgggagatgtggcatcccaccctgattgcagaggcc
ctgtttgccattgccaacatcttcagttctctgcggctcatctccctgttcactgccaac
tcacacctggggcccctgcagatctcactgggccgcatgctgctggacatcctcaagttc
ctcttcatctactgcctggtgctgcttgccttcgccaacggcctcaaccagctgtacttc
tactatgagaccagcgctgcagaggagccccataactgcaagggcatccgctgtgagaaa
cagaacaacgccttctcaacgctatttgagaccctgcagtccctgttctggtctgtgttt
ggtttgctgaatctctacgtcaccaatgtgaaagcccgacacaagttcacggaatttgtt
ggtgccaccatgtttggcacgtacaacgtaatctctctcgtggtgctgctgaacatgctg
atagccatgatgaacaactcctaccagctcattgcagaccatgccgatattgagtggaag
tttgcccggacgaagctgtggatgagctattttgatgaggggggcaccctgccgcccccc
ttcaacatcattgtgagccccaagtccatctggtacctgtgcgtgtggcttcaccggcag
ctctgcccagggaagagccgtgacgaggagcacaagaaacgcgaaaacttcaagacattc
actgaacgccatgctgacatcctcatccagaaccaacattaccaggaagtcatacgaaat
ttagtgaaaagatatgtagcctccatgataaggagtgccaagacagacgagggtctaacg
gaggagaatttcaaggagctgaagcaggacatttccagtttccgctatgaagttctcgac
ctgctgggcaacaggaagcccccgcggcggacctactcctccagcagcgatgccaccctg
aaggacgagattaatgacaatggtgggagcaagagcaaatccaagaacgtctccttcaac
caggccgacaaaaagaaagatgccgtcagcgtgtcggctctgttccgctccatgtcggga
atcaacattgctgaggagaaaccaaagagcaatggcttcaagaagtcctttgtcaagaac
ggcaacaggctgcagagaatctccacctccaaaaaggactctttcaagagactgggcctg
ctgttctccaaaatgaacgggcatgtttcagagcccagctcctcagaacccatgtacact
atctcggacggacttattcagcccaagcacatgtggcaggacttcaagtactctcagagt
gaggttcacctcaatgaggttggcaaggatgagccggccaaggtcaacggcacggaccgt
ctcctgcctcccatctgcagcaactcccttcaatgtgcttccagcatcaccgcttccagc
tccaagctcatcaactccacggaggatgtgtttcatggctgggagggtggttgcagtgtg
ctcattaacaattggaaagcaggacaagaggacaacattaccacacagttatga
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