Polyodon spathula (Mississippi paddlefish): 121296334
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Entry
121296334 CDS
T07273
Name
(RefSeq) 72 kDa type IV collagenase-like
KO
K01398
matrix metalloproteinase-2 (gelatinase A) [EC:
3.4.24.24
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
121296334
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121296334
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.24 gelatinase A
121296334
Peptidases and inhibitors [BR:
pspa01002
]
Metallo peptidases
Family M10
121296334
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M10
fn2
Hemopexin
PG_binding_1
Astacin
Reprolysin_5
Reprolysin_4
Reprolysin_3
DUF4953
Motif
Other DBs
NCBI-GeneID:
121296334
NCBI-ProteinID:
XP_041077695
LinkDB
All DBs
Position
21:1697918..1710320
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AA seq
654 aa
AA seq
DB search
MRSAFQPKHLLNVFLVQFFVWQQTSAAPSPIIKFPGDEKPKTDKEIALHYLNKFYGCPQD
RCNLMVLKDTLKTMQKFFSLPETGEIDQKTVEVMKKPRCGVPDLANYNFFARRPKWEKTG
ITYRILGHTPDLDEEVVDDAFARAFQVWSNVTPLKFTRIMDGEADIMINFGRWEHGDGYP
FDGKDGLLAHAFAPGPGVGGDSHFDDDEHWTLGEGQVVKVKYGSADGEFCKFPFLFMGKE
YNSCTAEGRDDGFLWCSTTYNFDDDAKYGFCPHELLFTLGGNAEGAPCKFPFNFQGTKYE
SCTTEGRTDGYRWCGTTEDYDKDKTYGFCPETAMSTVGGNADGSPCVYPFTFLGKTYDSC
TSEGRSDGKMWCATTKSYDDDRQWGFCPDQGYSLFLVAAHEFGHALGLEHSHDPGALMAP
MYTYTKNFRLSNDDIKGIQELYGAPTDRPLPPTQGPVTPMDLCQEDIVFDGVAQIRGETF
LFKDRFLWRTTNPRGKPTGPMLVATFWSELPETIDAVYEIPQEEKTVFFAGKKYWVYLAS
SLESGHPKKISSLGLPADLDRVDAAFSFQKNKKTYLFAGDKFWRYNEVKKKMDPGFPKFI
GDAWNGVPDSLDAAFQFNGDGFTYFFKDWYYLKMDDTNLKIVKVGSVKSDWLGC
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaggagcgcttttcaacctaaacaccttttaaatgtgtttctcgtccaattctttgtt
tggcagcaaacttcagctgcaccctcaccaatcataaagttccctggagacgaaaaaccg
aaaacagacaaagagattgcactgcactatttgaacaagttctatggctgcccacaagac
cgctgcaacctcatggtgctcaaggacaccctgaagaccatgcagaagttcttctcactg
ccagagacaggggagattgatcagaagacggtggaggtgatgaagaagcctcgctgtgga
gttccagacctagctaattataacttctttgccaggaggcccaagtgggaaaagacgggc
attacctacaggattctggggcacacgcctgacctggatgaagaggtagtggatgatgcc
tttgctcgtgcctttcaagtgtggagtaacgtgacgccgctgaaattcacaaggatcatg
gacggggaagctgatatcatgatcaacttcggacgctgggagcacggggatggctacccc
ttcgatgggaaggatggtctgctggctcacgccttcgcccccggcccaggcgtgggtgga
gactctcactttgacgacgatgaacactggaccctcggcgaaggacaagtggtgaaagtg
aagtatggaagcgcagatggtgaattctgcaagttcccgttcctcttcatggggaaggag
tacaatagctgcacagctgaggggcgggacgacggcttcctgtggtgctccacaacctac
aacttcgacgacgatgccaagtacgggttttgcccccatgaactgctgttcactctggga
ggcaatgccgagggcgccccctgcaagttccctttcaatttccaaggcaccaaatacgag
agctgcaccacggaggggcggactgatggctaccgctggtgcggcaccacggaagattac
gacaaggacaagacctacgggttctgtccagagacagccatgtccacggtgggtgggaat
gctgacggctctccctgtgtctaccccttcaccttcctgggaaagacgtacgactcgtgc
acctccgaggggcgcagcgatggcaaaatgtggtgtgcgaccacgaagagctacgatgat
gaccgccagtggggcttctgccctgatcagggttacagtctcttcctggttgctgcccat
gagtttggccatgccttgggtctggagcattcccatgatccgggggccttgatggctccc
atgtacacctacaccaagaacttccgcctctccaacgatgacatcaaaggaattcaggag
ctctatggagcaccaacggatagacccttgccaccaacccagggcccagttacccccatg
gatttgtgccaggaggacattgtctttgacggcgtggcccagatcagaggagaaacgttc
ctcttcaaagacagattcctatggaggaccaccaatcccaggggaaagcccacaggcccc
atgcttgtggccacattctggtctgagctgccagaaaccattgatgctgtgtatgagatc
cctcaggaggagaagactgtgttcttcgcaggcaagaagtactgggtctatttagccagc
agtctggagagcgggcatccaaagaagatctcctctctggggctgcctgctgatctggac
cgtgttgatgctgctttctccttccagaagaacaagaagacctacctcttcgcaggtgac
aagttctggagatacaacgaggtgaagaagaagatggaccctggcttccccaaattcatt
ggagatgcctggaatggagtgccggacagtctagacgctgccttccagtttaatggtgat
ggtttcacctatttctttaaggactggtactatctgaagatggatgacaccaatctgaag
attgtgaaagtgggaagtgtgaagtctgactggctaggctgctga
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