Polyodon spathula (Mississippi paddlefish): 121296772
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Entry
121296772 CDS
T07273
Name
(RefSeq) rap guanine nucleotide exchange factor 6-like isoform X1
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121296772
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
RA
PDZ_6
cNMP_binding
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
121296772
NCBI-ProteinID:
XP_041078476
LinkDB
All DBs
Position
22:3827285..3899849
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AA seq
1647 aa
AA seq
DB search
MTSSVDISFKRALKKQPFERTEEDLNTIFSHLHGMDILSHLREHQLRSMCTTARYERHEA
HRVLFYPHSISTCWYILLSGSVFMKESMFLPRCCFGKQSGGRRGCECIILEPSEMIVVEN
TNENEENALQREDPRRQSRRRFTKVNQRGERQIITDNEESSNNPPDYADNQLPADLTKMH
LTDNPHSHMTHVPPSQSGCSIASDSGSSSLSDIYQATESEIGDVDLSGLPEAAVDSEEEE
EEDEDIDRASDPLLGRDVVRDCLEKEPADRTDDDIDHLLEFMHQLPAFANMTMSVRRELC
SVMILEVVEQAGAVILEDGQELDSWYVILNGSVEITHLERNEILCMGNSFGISPTLDKQY
MSGLVRTKGDDCQFVCIAQQDYWRIVNHVEKNTHKVEEEGEIVMVKEHRELDRSGTRKGH
IVIKGTPDRLIMHLVEEHSVVDPTYIEDFLLTYRTFLSSPMEAGRKLLEWFKVDSLRDKV
TRVVLLWVNNHFNDFEGDPAMTQFLEEFENNLEMAKMKGHLRLLNIACAAKAKWRQVTLQ
KPSRESPLYFSLLGGSEKGLGIFVESVEPGSKAAEAGLKRGDQIMEINGQNFENIANAKA
VEILRNNTHLCITVKTNIFVFKDQLSRITHEKKNGMPHIPKIQEKKGNRYSIPDLPLDME
HMFPNEKGNKKMKASTVSGGRNKIRKILGFSILPPKPFSEGGVSQSQDDSIVGTRQCRHS
VAIMPIPGTLSSSSPDLLQPAVNVLDFSNPADIPDQVIRVFKADQQSCYIIISKDTTAKD
VVSHAVNEFGLTAAAETYSLCEVSISPEGVIKQRRLPDQFSKLADRIQLNGRYYLKNNME
TETLCSDEDAQELLRESQISLLQLSTVEVATQLSMRDFELFRNIEPTEYVDDLFKLNSKT
GNAHLKQFEEVVNQETFWVATEILKEPNQFKRMKIIKHFIKIALHSRECKNFNSMFAIIS
GLYLVPVARLRGTWEKLPSKYEKLFRDLQDIFDPSRNMAKYRNVLSSQSVQPPIIPLFPV
VKKDLTFLHEGNDSSVEGLVNFEKLRMIAKEIRHVTRMTSVNMDPALMFRQRKKRWKSLG
SLSQGSTNSNMLDVQGGAHKKRVRRSSLLNAKKLYEDAQMARKVKQYLSNLNVETDEEKF
QIMSLQCEPAYSTLSKNLNDRRAGKSDLSPVSMRSSNPSGKSHQQHRISQVLQVPSVNLH
PLRRKGTLKDVASSSAGSPQCVKKTAGTSDDVSCKRAADDAISTASSLHSSPPVSPQGSP
HKVGSIPRSRNSSQMNLSGSSSSLTSETSTKNSGPRSYGIGYALMPTTKSDNFSDSSHSE
ISSRSSIVSNCSADSTCVTSEERSLTQHLSFPEPTAAADRKENMPTAAPQCSHPSTSYSV
PRPAVTRGSTCTPSTSLDEFARGHIFTDTADSGRGSWTSCSSNSHDNFQSIQNQRGWDLG
SFHHTQLDGPIVEVEPTGSLAEEDLQRSNRHSKDSLELSQSRQSWASSSSLSDTYEGNYG
TIKRRVLDSSGVTQGEASDCEPSTDAVYKTVTSSTEKGLIVYCVTSAQKDDRYRAPPPTP
PGYLGIPLVAVKEGASCHPRLKPPDYSMALQRSKLVPPHCAIARQPEAKTLVQSLTQKRQ
DSDPRLAHVNQQRERASEEDEEQVSAV
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgtctgtggatatatcgtttaaacgggctttgaagaaacagccatttgaaagg
acagaagaggatttaaacactattttttctcaccttcatggcatggatattttatctcat
ctccgagaacatcagctcagatcaatgtgtaccacagctcgttatgagaggcatgaagcc
catcgtgtcctgttctacccccacagcatttctacatgttggtatatcctactctcaggc
tcagtgttcatgaaggaatccatgtttttacccagatgctgttttggcaaacagtctggg
gggagaagaggctgtgaatgcatcattttagagccatcagaaatgattgtggtggaaaac
accaatgagaacgaggagaatgccttgcagcgggaagatccacgtcgccagtccagacgc
agattcacaaaagtcaaccaaaggggggagaggcagatcatcacagacaacgaggagtcc
tccaacaaccccccggattatgctgataaccagcttcctgcagacctcaccaagatgcac
ctcacagacaaccctcattcacacatgacgcacgtccctcccagccaatcggggtgtagc
attgccagtgactctgggagcagcagcttgtctgatatctaccaggctacagaaagcgag
atcggggatgtggatctgtccgggcttccagaggcagctgtcgattctgaagaggaggag
gaggaagacgaagacatcgaccgggcttcagatcctcttctgggaagggatgtggttcga
gactgtctggagaaggagccagccgataggactgatgatgatattgatcacttgctggag
ttcatgcaccagctccctgcttttgcaaacatgacgatgtctgtcagaagggagctgtgc
tctgtcatgatacttgaagtagtagaacaagccggggccgtcattctcgaagatggacaa
gaactggattcctggtacgttattctgaatggctcggtggaaatcactcatcttgagagg
aatgagattctttgcatgggaaacagcttcgggatttctcccactctggataaacagtac
atgagcggactagtgcggaccaaaggagatgactgccagtttgtgtgtatagcccagcaa
gactactggaggattgtgaaccatgtggagaagaacacacacaaggtagaggaggaaggg
gagattgtgatggtgaaggagcacagggagctggaccgcagcggcacaaggaaagggcac
atcgtcatcaagggaactccagatcggcttataatgcacttggtagaagagcattctgtg
gtggaccccacctacatcgaagatttcttgctcacctacaggacattcctgtcgagcccc
atggaggctggaaggaaattgttagagtggttcaaggttgacagcctcagggacaaggtc
acacgggtggtgttgttgtgggtgaacaatcacttcaatgattttgaaggggatcctgca
atgacgcagtttctcgaagagtttgaaaacaatttggaaatggcaaaaatgaaaggtcac
ctccgactgctgaacattgcttgtgcagctaaagccaagtggagacaagtaaccctgcag
aagccatcgagagagtcccccctctattttagcctgctgggaggaagtgagaaagggtta
gggatctttgttgaatctgtggaaccagggagtaaagcagccgaggctggactgaaacgg
ggagaccagataatggaaataaacgggcagaattttgaaaacattgcgaatgctaaagct
gtcgaaatcctgaggaataacacgcatctgtgtataacggtgaaaacaaacatatttgtg
tttaaagatcagttaagcagaatcacgcacgaaaaaaagaacggaatgccgcatattccc
aaaatccaagagaaaaaaggcaaccgctactccatcccagacctgccactggatatggaa
cacatgtttcctaatgaaaagggaaacaagaagatgaaagccagcactgtgtcgggagga
aggaacaaaatccgaaagatcctgggcttcagcatcctgcctccaaagcctttcagtgaa
ggtggagtaagtcagtcccaagacgacagtatcgtagggaccaggcagtgcagacacagt
gtagccatcatgcccattccaggaactctgtcatccagcagccctgacctcctccagcct
gctgtcaatgtgctggacttctccaaccctgcagacattccagatcaagtgatccgcgtc
ttcaaggcagaccagcagagctgctacatcataataagcaaagataccacagcgaaggac
gtggtgtcgcatgcagtcaatgagttcggcctgacagcagcggctgagacctactccctc
tgtgaggtttccatcagtccggagggagtgataaaacaaaggaggcttcctgaccaattt
tccaaactagcagacagaatccagctcaatggaagatactatctcaagaacaacatggag
acagagactttgtgctcagatgaggatgcccaggagctgctgagagagagccagatctcg
ctgctccagctcagcactgttgaggtggccacacagctctccatgagggatttcgagctg
ttccgcaacatcgagcccacggagtacgtggacgacctcttcaagctgaactccaagacc
ggcaacgctcacctcaaacagttcgaggaggtggtgaaccaagagacgttctgggtggcc
acggaaatcctgaaggagcccaaccagttcaagaggatgaagatcatcaagcacttcatc
aaaatcgctctgcacagcagagagtgcaagaatttcaactccatgtttgcaatcatcagc
ggtctgtatcttgttccagtcgctcgcctgaggggtacatgggagaaactgccaagcaaa
tatgagaaacttttcagggatcttcaagatatttttgacccttccagaaacatggccaag
tatcgcaacgtgttgagcagccagagtgtgcagccgcccatcattcctcttttcccagtt
gttaagaaggacctaacctttcttcatgaaggtaacgattcaagtgtggaaggtttggtg
aactttgaaaaactgcgaatgattgccaaggagatacgacatgtcacccgaatgacctcc
gtgaacatggatccagccttgatgttcagacagaggaagaagagatggaaaagtttagga
tctttaagtcagggcagcacaaactctaacatgcttgatgtacaaggaggggcccacaaa
aagcgtgtgcgtcgcagctccctgctcaatgccaagaagctgtatgaggatgcacagatg
gcacggaaagtgaagcagtacctttccaatctgaatgtggaaaccgacgaggagaaattc
cagatcatgtccctccagtgtgagcctgcctacagcaccttgtccaagaatctaaatgac
agacgagcaggaaaatcagatctgtctccagtgtccatgaggtcctcaaacccgtctgga
aaatctcaccagcagcacagaatcagccaagttctgcaggtgccttctgtcaacctgcat
ccgctccggagaaaggggaccttgaaggacgtcgcctcatccagtgctggttctccccag
tgtgtaaagaaaactgccggcacgtctgacgatgtctcttgtaaaagagctgccgacgat
gccatatctacagcctcctccctgcattccagcccccctgtatctccccagggatcacca
cacaaagttgggagtatcccgagatctcggaactccagccagatgaatctctcaggctcc
tcctcatccctgaccagcgagaccagcaccaagaacagcgggccacgcagctatgggata
ggttacgctctgatgccaaccacaaaatctgataacttctctgactcgagccacagcgag
atctcctcccgctccagcattgtcagcaattgctctgctgactccacgtgtgtcacatca
gaagagcgcagcttaacacagcatctcagcttcccagaacccactgcagctgcagacagg
aaagaaaacatgccaaccgcagcaccccagtgcagccacccctccaccagttattcagtg
ccaaggcctgctgtaaccaggggctcaacgtgtacgccctccacaagcctcgatgagttt
gcccgtggccacatcttcacagacacagcagacagtgggaggggcagctggacgtcatgc
tcaagcaactcccacgacaacttccagagcatccagaaccagagaggctgggacctgggc
tctttccaccacacccagcttgatgggcccattgtcgaggtggagcctacagggtccttg
gcagaggaggaccttcagagaagtaataggcattccaaagacagcttagagctgagccag
tcgaggcaaagctgggcctcctccagctccctctctgacacgtatgaggggaactacgga
accattaagaggagggttctggatagttctggagtaacccagggcgaagcttcagattgt
gaaccaagcacagatgcagtttataaaactgtcacttcaagcacagaaaagggacttata
gtgtactgtgtcacttccgctcagaaggacgatagatatagggcaccaccacccactcct
ccaggatacctgggaatcccattagtggctgtaaaggaaggagcatcctgccacccacgt
ttaaaacctccagactatagtatggcattgcagaggtcaaagttggtcccaccccactgt
gccattgctaggcaaccagaagccaagacgctagttcagtccctgacacaaaagcggcaa
gattctgaccctagactagcccatgttaatcaacagagagaacgagctagtgaggaggat
gaagagcaagtgtcagctgtgtaa
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