Polyodon spathula (Mississippi paddlefish): 121296790
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Entry
121296790 CDS
T07273
Name
(RefSeq) protocadherin gamma-C5-like isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121296790
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Protocadherins
121296790
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
121296790
NCBI-ProteinID:
XP_041078511
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Position
22:complement(9832855..9948733)
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AA seq
943 aa
AA seq
DB search
MECSKTKRSLHWQVLCFYVSCHWISAYCQLKYSVPEELNTGAFVGNIAKDLGLDVAKISE
RNLRIVSDSSMQYFEVSSENGALVIKDKIDREQICGLSLTCSLHLQLVLQNPLELYRVEV
QILDVNDNAPQFPAKNISLEISEAATPGTQFHLERAQDPDVGSNSLRTYVLSPNDCFILN
VETKSDGSKFPELVLEKALDREKQSVYNLLLTAFDGGTPQKSGITNVIIKILDVNDNAPV
FDKAVEKVTLLENSSTGTIVAKLNASDMDYGLNGEILYLFSKYTSETVRQLFNVDPRSGE
ITVNGVIDFEEGNVYDINIQARDKGSPALEGSCSIKVEVIDVNDNAPQLTITSMSSPVAE
NALPGTVIALLSVRDRDSGHNGEVLMQILESMPFKLKSSFHGHYSLITDGPLDRETVPEY
NITVTATDSGSPPLSSSIILPVSISDVNDNAPVFSQPSYTVHIQENNAPGATICSVTAFD
ADVGKNSQLSYSVLDSTIQETSVSSYVYINLENGNIYSMRSFDYEQIKVFQIHVQVKDAG
IPSLSSNVTVHVFVLDLNDNAPAVVYPAFPKGSALQLTVPRSAEAGYLITKIVAVDPDSG
HNAWLSYSIPQSKDTGLFRVATYTGEIRTARKLQDLDEALQNLVIIVKDNGVPPLSASVP
IDIAVEENGSETSSEFRDTSAKKKGMSDITLYLIIALASISAISFLAFIILIVKCLRQSG
GHGGCLGGCFSSKQSLRSREAFQRSQKSLHLQLNPDGPIKYVEVVGGSMESQNQYYRSCL
SAVSDRSDLMFIQACSPSTPMGDTNTTDMSLSSNNLITTACKQKPANTEWRFSQGQRPGP
SGSQRPEEAGPWPNPPTEAEQLQALMAAANEVSAATATLDAGTMGLSTRYSPQFTLQHVP
DYRQNVYIPGSTSTLTGTNSQPEGKNPQPSSGNKKKSGKKEKK
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggaatgcagtaaaacgaaacgctctttgcactggcaagtattgtgtttctatgtctcc
tgtcattggatttctgcttactgtcagcttaaatattccgtcccagaagaattaaacacg
ggtgcgtttgttggaaatattgcaaaagatttaggactggatgtagcaaagatttctgaa
cgcaacctgcgaattgtctctgattccagtatgcagtatttcgaggtgagctcggagaac
ggagctttggttattaaagataaaatagaccgagaacagatatgtggcttaagcttaacg
tgttccctgcacctccagttagtgcttcaaaacccgttggaattgtaccgagtggaagtg
cagatactggatgtcaatgacaacgcacctcaattcccagcgaaaaatatatcgttggag
atttcagaagctgctacaccgggaacacaatttcaccttgagcgcgcacaggatccagat
gttggctccaattctttacgcacctatgttctgagccctaatgactgttttattttaaac
gtggagacaaaaagtgatggtagtaaatttcctgaactggtactagagaaagctcttgac
agggaaaaacagtctgtgtataatctacttcttactgcatttgatggaggaacacctcag
aaatctgggattaccaatgtaataatcaaaatacttgacgtaaatgataatgcaccagtc
tttgataaggcagttgaaaaggtaaccctacttgaaaactcgtcaactggtacaatagtt
gcaaaactaaatgcatctgatatggattatggactgaatggtgaaatactgtatttgttt
agcaagtacacgtcagaaacagttcgtcagctgttcaatgtggaccccagatctggggaa
atcacagtaaatggtgtcatagattttgaggaaggcaatgtgtatgatattaatatacaa
gccagagataaaggaagccctgctttggaaggatcttgtagcattaaagtggaagtgatt
gatgtgaatgataatgctccacagctgacaataacgtccatgtccagtcctgttgcagag
aatgctttacctggaactgtaattgcactccttagtgtaagggatcgggactcagggcac
aatggggaggtgcttatgcagatacttgaaagcatgccattcaaattaaagtcttccttt
cacggccactactccttgataactgatggtcccctggatcgtgaaacagttcccgaatac
aacatcacggtcacagccactgattcgggttcccctccactatcctctagtataatcctg
cctgtcagtatttcagatgtcaatgacaatgctccagtgttttctcaaccttcatataca
gtccacatacaagaaaacaatgcccccggagctactatttgttctgtaacagcatttgat
gctgatgtgggcaaaaactcccagctttcttattctgtcttggacagcacaatccaagaa
acatcagtttcctcttatgtgtacattaacttggagaatgggaacatttactccatgcga
tcctttgactacgagcagattaaagttttccaaatccatgtgcaggtaaaagatgctggc
ataccgtcactgagctctaatgtgacagtgcatgtatttgtcttggacctaaatgacaat
gcccctgcagtggtgtatccggctttcccaaaaggctcagctctacagcttacagtccct
cgctctgctgaagcaggctaccttataactaagatagtcgctgttgatccggacagtggc
cataatgcatggctttcctacagcattccacaaagcaaagacactggcctgttccgtgtg
gcgacttacactggggaaataaggactgctcgaaaattacaggatctggacgaggcctta
cagaatcttgtcattatagtgaaagacaatggggtgcccccactctctgcctcagtgcct
atcgacatagctgtagaagaaaatggctcagagacttcctctgaattcagggacacgtct
gcaaagaaaaaaggcatgtctgatataaccctgtatttaataattgctctagcttccatc
tctgctatttcattcctagcattcataatcctcattgtgaagtgcctgagacagagtggg
ggccatggtggttgtttgggcggctgtttcagtagcaaacagagcctgcgttccagggaa
gcttttcaaagatcccagaaaagccttcatttgcaactcaaccctgacgggccaatcaaa
tacgtggaagtggttgggggttcgatggagtcccagaatcaatactataggtcgtgtctc
tctgcggtatctgacagaagtgacttaatgtttatccaggcttgtagcccgtctacaccc
atgggtgataccaacaccactgacatgtctctgtctagcaataacttaattactacagcg
tgcaagcaaaaaccagcaaatactgaatggcgtttctcccaaggacagagaccaggacca
agcggctctcagcgtccagaggaagctggaccctggccaaaccccccgactgaagcagag
caactgcaagccctgatggctgcagctaatgaggtgagtgcagcaacagcaacgcttgat
gctggcaccatgggcctgagcacccggtacagtcctcagttcaccctgcagcacgtccca
gactacaggcagaatgtctacatcccaggaagcacctccacactgacaggcaccaactct
cagccagagggcaagaacccccagccatcctccggaaacaagaaaaaatctgggaaaaaa
gagaagaaataa
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