Polyodon spathula (Mississippi paddlefish): 121297866
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Entry
121297866 CDS
T07273
Name
(RefSeq) isoleucine--tRNA ligase, cytoplasmic-like
KO
K01870
isoleucyl-tRNA synthetase [EC:
6.1.1.5
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
121297866
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pspa01007
]
121297866
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pspa03016
]
121297866
Enzymes [BR:
pspa01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.5 isoleucine---tRNA ligase
121297866
Amino acid related enzymes [BR:
pspa01007
]
Aminoacyl-tRNA synthetase
Class I (U)
121297866
Transfer RNA biogenesis [BR:
pspa03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
121297866
Prokaryotic type
Other AARSs
121297866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Ubiquitin_IARS1
Anticodon_1
DUF5915
tRNA-synt_1g
tRNA-synt_1e
Plectin_PPL
DUF5676
Motif
Other DBs
NCBI-GeneID:
121297866
NCBI-ProteinID:
XP_041080359
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All DBs
Position
23:complement(4978824..5017693)
Genome browser
AA seq
1267 aa
AA seq
DB search
MVQPVPETIHFPSEEERILKLWEDHNCFQECLKQSKNRPKFTFYDGPPFATGLPHYGHIL
AGTIKDVVTRFAHQSGFHVDRRFGWDCHGLPVEYEIDKTLGIKGPEDVAKMGISEYNKQC
RSIVMRYASEWEATVTRLGRWIDFKNDYKTLYPWFMETVWWVFKQLYDKGLVYRGVKVMP
FSTACNTPLSNFESHQNYKDVQDPSVTVNFPLEEDESVSLIAWTTTPWTLPSNLALCVNP
EFMYVKIKDNATGKVYIMMEARLSALFKSDVEYTLLDKFPGKTLKGKKYKPLFDYFLTSK
ESGAFTVVMDNYVREEEGTGVVHQAPYFGADDYRVCMDYNIIQKDSVPVCPVDSSGCFTA
EVSDFVGQYVKDADKNIIKLLKEKGRLVNASTFKHNYPFCWRSDTPLIYKAVPSWFVRVE
HMVDKLLENNSKCYWVPEFVREKRFGNWLKDARDWAISRNRYWGTPIPLWVSEDFEEVVC
VGSVAELEELTGVKVTDLHRESIDHLTIPSRCGKGVLRRLQEVFDCWFESGSMPYAQVHY
PFENRREFEEAFPADFIAEGIDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLASDGQK
MSKRKKNYPDPVQILNAYGADALRLYLINSPVVRAENLRFKEDGVRDVLKDVFLPWYNAY
RFVIQNVQRLHKEEGIQFLYNESTAKKSDNIMDKWILSFTQSLIQFFKAEMDAFRLYTVV
PRLVKFVDMLTNWYVRTNRRRLKGESGTEDCVWALETLFSVLFFMCRLMAPCTPFITEMM
YQNMKHLIDPASLEQKETSSIHYLMLPQVRVSLIDKRIESAVSQMQSVIELGRVIRDRKT
LPVKYPLKEVVVIHQDPEALQDILSLEKYILEELNVRQLTLSADKDKYGIRLRAEPDHMV
LGKRLKGAFKSVTAAIKELKSEQLESFQKTGAIVVDGQELHEEDLRLMYTFDQGSGAASQ
YEAHSDAQVLVLLDVTPDQSMVDEGVAREVINRIQKLRKKGHLVPSDEITVYYSSKPAGE
YLEKVIQAHTDFILATTKAPLKNYPVPASASVIIQEKTKLKESDLDLTIVKGASEVRAPL
SGPACAYVNVKITLDNKEQAGVILLENPKGDNTLDFHGLLGVCSSIFDFENTKLSIYNGK
TELGSKTDLLALNGKTLHVTSGAAPADPSSTNALLCQYINLQLLNTKPQECQSGILGTLL
LENPVGQNELTYKGLLHEAAKVFGIRSRRLKLYLDEALTEEVTQDYSLKMLNTKMVYIQV
LPTTAEA
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggttcagccagtcccagagaccattcatttcccctctgaggaagagcgcatcctcaag
ctatgggaggaccataactgttttcaggaatgtctgaaacagtctaagaacaggccaaaa
tttaccttttatgatggacccccatttgctaccggtcttccccattacggccacattttg
gctggcactataaaggacgttgtgaccaggtttgcgcatcagagtggattccatgtagac
agaaggtttggatgggattgtcatggattgccagtggaatatgaaatcgacaaaacgctg
ggaataaagggaccagaggatgtggcaaaaatgggaatctctgaatacaacaaacagtgc
agaagcattgtgatgagatacgcgagtgagtgggaggcaactgtgaccagattgggacgt
tggattgattttaaaaatgactataagactctctatccctggttcatggaaacagtttgg
tgggtgtttaagcaactgtatgacaaaggactggtgtacagaggagtgaaggttatgcca
ttttccactgcatgcaacactccgctgtcaaacttcgagtctcaccagaattacaaggat
gttcaagatccctctgtaactgtgaactttcctctggaagaggacgaaagcgtttctctg
attgcttggacaaccacaccttggaccctgcccagcaaccttgctctttgtgtgaaccca
gagttcatgtatgtcaaaatcaaagacaatgctacagggaaagtgtacatcatgatggag
gctcggctatcagccctctttaagtcggatgttgaatacacacttcttgataaattccct
ggcaagacccttaaaggcaagaaatacaaacctttgtttgactacttcctaacgagcaaa
gaaagtggtgctttcactgtagtgatggataactatgtgagagaggaggaaggcacaggt
gttgttcatcaggccccgtattttggagctgatgactacagggtctgcatggattataat
ataatccagaaagattctgtaccagtctgcccagtggattcttcgggctgcttcaccgca
gaagtgtcagactttgttggacaatatgttaaggatgcagacaaaaacattattaaatta
ttgaaagaaaaagggcgattggttaatgccagcactttcaagcacaactacccgttctgc
tggagatcggacaccccactgatttacaaagctgtgccgagctggtttgtgcgagtggaa
cacatggtggacaagctgctggagaacaacagcaagtgctactgggttcctgagtttgtg
agggagaagcgttttgggaactggttgaaagatgcccgtgattgggcaatttcaaggaac
aggtactggggtactcccattccactctgggtcagcgaggactttgaagaggtggtgtgt
gttgggtcagtagctgagttggaggagctaaccggcgtgaaggtaacggatcttcaccgg
gaaagcattgatcacttgacaatcccgtctcgctgtgggaaaggggtcctgcgccggctt
caggaagtttttgactgctggtttgagagtggaagcatgccgtacgcacaggtgcactat
ccgtttgaaaaccggagagaattcgaagaggccttccctgccgacttcattgcagagggt
atcgatcagaccagaggatggttttacaccctcctagtgttgtcaacagcactctttggt
aaacctcccttcaagaatgtgattgtaaacggactggttctagcaagcgatggacagaag
atgagcaaacgcaagaaaaattacccagatcctgtgcaaattttaaacgcgtatggtgcc
gatgcattacggctatacctgataaattccccagtggtgcgtgctgaaaacctgcgtttt
aaagaggacggtgtgagagatgttcttaaagatgtcttcttgccctggtacaatgcgtac
cgtttcgtcattcagaatgtccagaggctccacaaggaagagggaatccagttcctctat
aatgaaagcacagccaagaaaagcgacaatatcatggataaatggattctgtcattcaca
cagtcgctcatccagttcttcaaggctgaaatggatgctttcagattgtacactgttgta
ccaaggctagtgaaatttgttgacatgttaaccaattggtatgtgagaacaaatcgcaga
aggttaaagggtgagagtggcacagaagactgtgtttgggctctagaaacactgtttagt
gttctgttcttcatgtgcaggttaatggctccctgcactccgtttattactgagatgatg
tatcagaacatgaaacacttgatcgatcctgcttcactggaacagaaggagaccagcagc
attcactacctcatgcttcctcaagtcagagtgtcgttgattgataagcgcattgagagc
gcggtgtcccagatgcagtctgtcattgaactgggcagagtgatacgagacaggaagact
ctcccagtcaagtatcctctgaaagaagttgtagtcatccaccaggaccctgaagctctg
caagacatcctgtccctggagaagtatatactagaggagctgaatgttcgtcagctgacc
ctctcggctgacaaagacaaatacggcatccgcttgagagcagagccagatcacatggtc
cttggcaaacgcctaaaaggagctttcaaatctgtcactgcagccattaaggaactgaag
agtgagcagctggagtctttccaaaagacaggtgccattgtggtggatgggcaagagctc
catgaggaggatctgcgactcatgtacacctttgaccaaggctctggagctgcctcccag
tacgaggctcactccgacgcacaggttttggttctgctggacgtcaccccagatcaatcc
atggtggatgaaggagtggccagggaggttattaaccgtatccagaaacttcgtaagaag
ggtcatctagttccttcggatgaaatcacagtttattacagctcaaaaccagcaggtgaa
tacttggagaaagttatccaggctcatactgacttcatactggcaactaccaaggcccca
ttgaaaaactacccagtgcctgcaagtgcaagtgtgatcattcaagagaaaacaaagctg
aaggaatctgatttggacctcactattgtaaagggtgcttcagaagtaagagctccactc
tctggccctgcatgtgcctatgtcaatgtaaaaataacacttgacaacaaagaacaagct
ggtgttattctgctggagaatcccaagggggataatacactggatttccacggactactt
ggagtctgttccagcatctttgactttgagaatacgaaactgtctatatataatgggaaa
acggaactgggcagcaagactgatctcctggctttgaatggaaagactctgcatgtgacg
tccggagcagctccagccgatccctccagcactaatgcactgctttgtcaatatattaac
ttgcagctgctgaacacaaagccacaagaatgccaaagtggaattctgggaactctcctg
ttggaaaacccagtaggccagaatgagctgacatacaaagggctcctgcatgaagcagca
aaggtgttcggtatcagaagcagaaggctgaaactctatcttgatgaggctctcacggaa
gaagtcacgcaggactactcgctgaagatgctcaacacgaagatggtgtatatccaagtt
ttaccaaccacagctgaagcataa
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