Polyodon spathula (Mississippi paddlefish): 121298301
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Entry
121298301 CDS
T07273
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121298301
09123 Folding, sorting and degradation
03018 RNA degradation
121298301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121298301
03041 Spliceosome [BR:
pspa03041
]
121298301
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121298301
mRNA degradation factors
5'-3' decay
Lsm complex
121298301
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121298301
Complex C
U2 snRNP components
121298301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Motif
Other DBs
NCBI-GeneID:
121298301
NCBI-ProteinID:
XP_041081287
LinkDB
All DBs
Position
23:complement(10853132..10855911)
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AA seq
102 aa
AA seq
DB search
MADEVEQQQTSNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagtagagcagcaacagacttccaacactgttgaggaacctcttgatctc
atcaggcttagtcttgatgagcgcatttatgtgaaaatgcgcaatgacagagagctcaga
ggaaggctacacgcttatgatcagcacttgaatatgattttgggtgatgttgaagagact
gtgaccacagtagaaattgatgaggagacgtatgaagaaatttataaatccacaaagagg
aacatcccaatgctgtttgttcgaggggatggtgtagtactagtagctcctccactgaga
gttggctag
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