Polyodon spathula (Mississippi paddlefish): 121299234
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Entry
121299234 CDS
T07273
Symbol
nphs1
Name
(RefSeq) nephrin isoform X1
KO
K24496
nephrin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121299234 (nphs1)
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
121299234 (nphs1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
C2-set_2
Ig_2
ig
V-set
fn3
C1-set
C2-set_3
Ig_DSCAM-DSCAML_C
Sp38
DUF6535
Trp_oprn_chp
Ig-like_POM152
Motif
Other DBs
NCBI-GeneID:
121299234
NCBI-ProteinID:
XP_041082820
LinkDB
All DBs
Position
24:complement(17836949..17854825)
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AA seq
1280 aa
AA seq
DB search
MKMTSALHRLTRALLLLCCIQASRGQQAFRMQPDNVTVVEGGTGVLQCQVEGVTGVVQWV
KDGLLLGPNRSMPGFPRYSMAGDEDKGEFNLQIERVTLEDDSPYECQVGQSESSIGIISH
TVWVNVLIPPGKPVIEEHRGGSEVEWVAGVEYTVSCSVTDTKPASEVRFTKSSNEVSGVE
VNVLPGSQEKLQSTRAVVRVTPQSQDNGNQMVCLAMNEAVSQPVETGFTMRVLFPPQPPR
IEGYDHTEVKAGETLSLECKSIGGNPLATLQWSKNDEVISTSWDTVSLTNTARSPLSLHI
QPEDNMARLTCEAVNQVTPVPLHHTITLRVVFLPSEVKILGSSSIAEKKQLSLSCFTAAS
NPPVQIRWWLGFRELTTTEVTITEASNGGRVTMSNLTHTVSREENGLQLTCEAFNEAIRF
TKSESVQLRVLYPPQKVWIESPPEGKQFKAGTEVKLTCFSSGGNPVGSITWFKDNKPVRY
VPSAIVSGMMASRQLIVTTQPDDNLATYRCNASNEAKAPPLTATTKLHVQFPPMNVKISS
SAKQVKRGQSLTLTCTTGSSNPVANISWFKNGERLRGFDLGKKKAEHGGESTMGRVYIKA
VSSDNGKRVTCQAYSAVLTQGVNTFHRLDVLYPPEFSPDQQQVVQAVEHDAARLPLRVSA
NPDNISYTWTYHGETLIKEGALRHHLKDGGELEIWNLTRTDAGDYKIRCKNTEGENETVI
KLDVQYSPSIKSLEDPTEVDLGDTAEIVCTADANPVTPGMFQWGWLGEEERELTADQQVM
EEATGKLIITEAKRSDAGLYECTVDNGIAPPAKQAVRLIVRFKPELQKGVHLSKVATSGD
GSRTATLSCKAEGIPKVDYSWAKNGVGLDLNHPRYSENTVHEGAFHTSTLTIINASAALD
YAIFTCTARNKLGLDVFHIQLVSTSRPDPPTGLQVASVTHNSVTLQWTAGFDGGLEQKFR
VRYHWEEAASFMYVDVFPPQATTFTITGLNAETPYNFSVNALNLLGESDYADSNAVLTVT
TREKPEKDDKIPSPPETEETPPTEGPVLPLYLIVVLAVVGGVLLILNSALVACLVKKWRT
HHSDAAGSEGKKGKGEGEGSSLTKPNEYGGGELLNKTARQTLLIDSCSELSSSVYESYEG
DSASGRSHYYYPASDFRPSLYPHQEAPECLSEGTSSFAGHWDQRRDAHDYEQVRDASLYE
EAGRPYPPPPSSGHYHSVLDRQGQALLDPRQGPDPTGAYQRRGRGQSEYEDPMRVYDSVA
EYTPSWRDYETPFEMRGELV
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgacatcagctctgcacagactcaccagagctctgctgctgctgtgctgcatt
caagcctccagggggcagcaggcattccggatgcagcctgacaacgtgactgtcgtggaa
ggggggacgggggtgctgcagtgccaggtggagggggtcacgggggtggtccagtgggtt
aaagatggacttcttctaggtcccaatcgaagcatgccagggttccctcgctacagcatg
gctggagacgaggataaaggggaattcaacctgcaaatagagcgggtgaccctggaggat
gactctccctacgaatgccaagtgggacagtccgagagcagcattggaatcatctcccat
actgtgtgggtcaatgtgctgatccctccagggaagcctgtgattgaggagcaccgcggg
ggttctgaagtggagtgggtggcaggggtggagtacactgtctcctgcagtgtgaccgac
accaagccagcctctgaggtcagattcaccaagagttcaaatgaggtgtctggagtcgag
gtaaatgttctcccggggtcacaggagaaacttcagagcacacgagctgttgtgagggtg
acccctcagagtcaggacaatgggaatcagatggtgtgcctggctatgaatgaggccgtg
tctcagcctgtggagactggctttacaatgagagtgttgttccccccccagcccccccgg
attgaggggtacgatcacaccgaggtgaaggcaggggagaccctaagtctagagtgcaag
tccatcgggggcaatccactcgccacactacagtggtcaaagaatgacgaggtcatctcc
actagctgggacaccgtctccttgaccaacaccgcccgcagtccactgtctctgcacatc
caacctgaagacaacatggccagactgacctgcgaggcagtcaaccaagtcactcctgtc
cccctccatcacaccatcactctacgagtcgtcttcctgccctcggaggtgaagatcctg
ggctcctccagcattgctgagaagaagcagctctccctctcctgcttcacggctgccagt
aaccccccggtgcagatccgctggtggctgggcttcagagaactcaccaccactgaggtg
accatcactgaggcatccaatggtgggagagtgaccatgtctaacctgacccacacagtg
tcccgagaggagaacgggctgcagctgacgtgcgaggcgttcaatgaggccatccgcttc
accaagagtgagagcgtccagctccgcgtgctctacccccctcagaaggtttggattgaa
agccccccggaggggaagcagttcaaagcagggaccgaggtcaaactcacctgcttctcc
agtggagggaacccagtgggcagcatcacctggttcaaggataacaagcccgtccggtac
gtcccgtctgcgatcgtttcagggatgatggcatcccgacagctgattgtcacgacacag
cccgacgataacctggcgacctacagatgcaacgcatccaatgaggcgaaagctccgccc
ctcaccgccaccacaaaactccacgtgcagttcccaccgatgaacgtgaagatctcttct
tcagcaaagcaagtcaagagaggccagtctctcacactgacctgcactacagggagcagc
aacccagtggccaatatctcctggttcaagaatggggaaaggttgcgtggttttgatctg
gggaagaagaaagcggaacatggaggcgagtcgacgatgggtcgggtctatatcaaagcc
gtctcctctgataacgggaagcgggtgacatgccaggcgtacagcgctgtgctgacacag
ggggtgaacaccttccacaggctcgatgtgctctacccccctgagttctccccggaccag
cagcaggtggtccaagctgtggagcacgatgcagcccgtctgcctctgagggtgtcggcc
aatccagacaacatcagctacacctggacctatcacggggagacgctgataaaagagggt
gcgctgcgccaccacctcaaggacggaggggagctggagatttggaacctgacccgcaca
gatgccggggattacaagatccgctgcaaaaacacggagggtgagaacgagaccgtcatc
aaactggacgtgcagtactctccctcaataaagagcctggaagatcccactgaggtggat
ctcggggacactgcggagatcgtctgcaccgctgacgccaatcctgtcaccccgggcatg
ttccagtggggctggctgggcgaggaggagagggagctgacagctgatcagcaagtcatg
gaggaggcgacagggaagctgatcatcacagaggccaagcgctcagacgctggactctac
gagtgcacagtggacaacggcattgcgcccccggccaaacaggcagtgcggctcattgtg
cgctttaaaccagaactgcagaaaggcgtgcatctgagtaaagtggccacctctggagat
gggagcagaactgccaccttgagctgcaaagcagaaggcatccccaaagtggactatagc
tgggccaagaatggggtgggtctggacctcaatcacccaaggtactcggagaatactgtg
cacgagggtgctttccacaccagcactctgaccatcatcaatgcaagtgctgccctggac
tatgccatcttcacctgcaccgcccgcaacaagttgggactggacgtcttccacatccag
ctcgtcagcaccagtcggccggacccacccacggggttacaggttgccagcgtgacccac
aactccgtcaccttgcagtggaccgcaggcttcgacgggggtctggagcaaaaattcagg
gtcaggtatcactgggaagaagcagccagcttcatgtatgtggacgtgttccccccccaa
gccaccacattcaccatcaccggcctcaacgcagagactccctacaacttctccgtcaac
gcactcaacctgctcggggagagcgactatgccgacagcaatgcagtgctgacagtcacc
actagagagaaaccagaaaaggacgacaagatcccaagcccacctgaaacagaggagact
ccccctacagagggccctgtgttgccgctctatctcattgtggtgttggcggtggtgggt
ggagtcctgctgattcttaactccgccctcgtggcctgcctggtcaagaagtggaggact
caccacagtgacgcagcaggttcagaagggaagaaaggaaaaggagaaggagaagggtcc
agtttgacgaagcccaatgagtacggaggaggggaactcctcaacaagacagccaggcag
accctgctcatcgacagctgctctgagctcagctccagtgtgtacgagagctatgaaggg
gacagcgcctcagggcgcagtcactattattaccccgcgagcgacttccgcccttccctc
tacccccaccaggaggcgccagagtgtctgagcgaggggacgagcagctttgcaggacat
tgggatcagaggcgggatgctcatgactatgagcaggtaagagatgccagtctgtatgag
gaggcggggagaccgtacccccctcccccttcctcggggcactaccacagcgtgctggac
aggcaaggacaagcgctgctggacccacggcaagggccagaccccactggagcctatcag
agaagagggcggggccaatcggaatacgaggatccaatgagagtctacgacagcgtggct
gagtacacgccctcctggagagactatgagacgccctttgagatgagaggagagctggtg
tga
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