Polyodon spathula (Mississippi paddlefish): 121299380
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Entry
121299380 CDS
T07273
Name
(RefSeq) fibrillin-1-like
KO
K06825
fibrillin 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04350
TGF-beta signaling pathway
pspa04518
Integrin signaling
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121299380
09133 Signaling molecules and interaction
04518 Integrin signaling
121299380
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121299380
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121299380
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121299380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_CA
cEGF
FXa_inhibition
hEGF
EGF
TB
EGF_3
Plasmod_Pvs28
Fibrillin_U_N
EGF_FBN_1st
EGF_PEAR1L
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
121299380
NCBI-ProteinID:
XP_041083035
LinkDB
All DBs
Position
24:9323130..9393060
Genome browser
AA seq
2877 aa
AA seq
DB search
MRLGCLLRFVLGFVAVSSLSVKESEGTERDSEAERYSEQKASRSKRRGGGQEVLKGPNVC
GSRFNAYCCPGWKTLSGGNQCIVPICRSSCGDGFCSRPNMCTCPSGQIAPSCVSKSVQHC
NIRCMNGGSCAEDQCLCQKGYTGNHCGQPVCESGCVNGGRCVGPNRCACTYGFTGAQCER
DYRTGPCFSSVSNQMCQGQLSGIVCTKTLCCATVGRAWGHPCEMCPAQPHPCRRGFIPNI
RTGACQDVDECQAIPGLCQGGNCINTVGSFECKCPAGHRFNEVTQKCEGKNLMKKYKVLQ
VKCSNTKGSYFCKCPQGYYTPPDGSRCIDARGGYCFSSLVSGRCANQLPQLLTRMQCCCD
SGRCWSDGSAPAMCPMRGTDEYRKLCSTQILIPGQPDPEWPVPSVPVGPDTPVHGQRPLL
PPDGGLPRPPINGQSPVILTQNITFAGNTCELYRNLCINGRCIPTPGSYRCECNMGFRLD
VRGECIDDVECDRNPCVNGNCINTQGSYFCQCHAGFQSTATRTECRDIDECLANGRICNN
GRCVNTDGSFHCVCNAGFEVTSDGRNCEDQDECLIKNMCLNGMCINEDGSFKCICKSGFQ
LAPNGRFCQDIDECETPGMCMNGRCVNTEGSFRCDCLPGLAVGLDGRVCVDTHMRSTCYG
GYKRGQCVKPFFGAVTKSECCCANIEYAFGEPCQPCPAPNSAEFNALCSKGPGITSDGRD
INECALDPDLCQNGVCENLHRTYRCNCNQGYEIDSSGKNCVDIDECAINRQLCENGQCRN
TPGSFTCSCPKGYVFKSDTDVCEDINECESSPCVNGNCRNNPGSFACECLQGSTLDKTGT
VCVETGKGTCWLKIINGRCEININGETLKSHCCATMGAAWGSPCAPCEPDPFCSKGYARV
RGTTCEDVNECEVFPGVCTNGKCVNTVGSFICQCPSGMTLDATGRTCVGISGDGLLISTR
KMDERCSSPIPGKHRVDACCCSVGAAWGPECEECPEKRTPEYDQLCPRGPGFSHRGDFVN
GRPFLKDVNECKMIHNLCSNGKCRNTIGSFKCKCDSGFALDSEERNCTDIDECRISPDLC
GQGTCVNTPGDFACECFEGYESGFMMMKNCMDIDECERNPLLCRGGVCVNTEGSFLCECP
TGHQVATDGSACLDVNECELSDNLCRNGRCVNMIGRYQCACNTGYRSTDDRLACVDIDEC
TIQNGGCETFCTNSEGSYECSCRAGYALMPDQRSCTDIDECEDNPDICDGGQCTNIPGEY
RCLCYDGFMSSEDMKTCLDVDECELNPNICLSGNCENTKGSFICHCDLGYSVKKGTTGCT
DINECEIGAHNCDKHATCTNTAGSFKCSCGPGWIGNGIKCVDLDECSNGTHMCSANAECR
NTMGSYRCLCKEGYSGDGFFCTDSDECAENVNLCENGHCLNIPGGFRCDCDMGFTPTVDG
KACQDIDECVFPDICVYGTCHNIPGLFRCECDTGYELDRTGGNCTDVNECADPTTCISGI
CVNTPGSYRCNCPPGFELNPTRVGCVDTRSGNCYLEFQPRGDGSDVLSCSNEIGVGVSKA
SCCCSLGRAWGNPCEQCPPINSSHYKILCPGGEGFRPNPITVILEDINECLELPGLCQGG
NCINTFGSFQCECPPGFYLNVETRVCDDVNECETPGICGPGTCYNTVGNYTCICPPDYMQ
VNGGNNCMDMRRSLCYRNFHSDNGTCDGELPFNMTKKMCCCSYNIGRAWNKPCEQCPIPS
TNEFAILCGSQRPGFVIDIYTGQPVDIDECRDIPGVCENGVCINMIGSFRCECPVGFVYN
DKLLICEDIDECQNGPVCQQNADCLNTAGSYRCECKPGYRFTSTGQCIDRNECLELPNAC
SHGQCIDIVGSFRCICNNGFKATADQTMCIDVDECERQPCGNGTCKNTVGSYNCLCYPGF
DLSHNSDCIDVDECSTNRGLCRHGNCINTVGSFVCVCQDGYELTADGRSCVDINECVVNP
GTCGPGTCQNLDGTYRCICPPGFYLTEERCEDIDECAQSPDICVFGTCSNTQGSFICKCP
EGFQLSSTGRRCNDIRVNFCFTKFENGKCFAAKARNTTKSACCCSAMPGEGWGSPCEICP
KQNESAFALLCPGGSGHDVGNGDSRVDLDECSSDPGICKNGQCINTDGSFRCECPFGFSL
DYSGINCEDTDECSVGNPCGNGTCTNVIGAFECACEEGFEPGPMMSCEDVNECAQNRLLC
AFRCVNIVGSYECKCPAGYVLREDKRMCKDQNECEDGIDDCESKGMLCKNLIGLYMCICP
PGYVRRPNGDGCIDKNECTAKPGVCENGRCVNTVGSYRCSCHEGFSASSSETECIDNRQG
FCFTEVLQSLCQMTSSSRNAVTKSECCCDGGRGWGPNCEICPLPGTGQFKKMCPLGPGYT
TDGKDIDECRVIGGLCQNGQCINNMGSYSCLCKSGYTTDLTGTGCVDLDECVQAPKPCNF
ICKNIEGSYLCSCPRGYILQEDGKSCRDLDECSTKQHNCQFLCVNTIGGFTCKCPPGFTQ
HHTACIDNNECLTEAGLCGAKGVCQNTPGSFSCECQRGYLLDQSGQNCEDMDECDGNHRC
QHGCQNMIGGYRCSCPQGYLQHYQWNQCVDENECLNSQVCGGASCHNTLGSFRCICPTGF
QFEQFRGACHDVNECASSQSPCSYGCSNTDGGYLCACPTGYYRVGQGHCVSGVGIGNGDQ
ALAVEGMGGDTDDNSLSPEACYECKINGYPKKGRKRRSTNGTEAEPQNNSQDENESISLA
SVDIEEPLVFSLNITDLDKKDHILELVPALTALTNHVRYLIDFGNEDGFFKINQKEGISC
LHLTKKKPVPGAYSLQISSIPLYKKKELDHLEDKHDKDYLTGELGDILKMKIHIILH
NT seq
8634 nt
NT seq
+upstream
nt +downstream
nt
atgaggttggggtgtctgctgaggtttgttctgggatttgtagctgtttcatctctctcc
gtcaaggaaagtgaaggtacagagcgagatagcgaagctgaaaggtacagcgaacagaaa
gccagcaggtcaaaaagaagaggaggcggtcaagaagtgctgaagggaccgaatgtttgt
ggatcacgtttcaatgcatactgctgcccaggatggaagactctgtctggtggaaaccag
tgcattgtcccgatttgccgaagctcttgtggagatggattttgctccaggccaaatatg
tgcacctgcccaagtggtcaaattgcaccctcttgtgtttccaaatcagttcaacactgc
aacattagatgcatgaatgggggatcatgtgcagaagaccagtgtttgtgtcagaagggt
tacactgggaatcactgtggtcagcctgtctgtgaaagtggatgtgtaaatggagggaga
tgtgttggaccaaaccgatgtgcctgcacatatgggtttaccggagcacagtgtgaacga
gattacaggactggaccgtgcttctcttctgtaagcaaccagatgtgccaagggcagctg
agtggcattgtgtgcaccaaaacactgtgctgcgcgacagttgggcgggcatgggggcac
ccctgtgagatgtgtccagcccagccccatccctgtcgccggggattcattccgaacatc
cgaacaggagcctgtcaagatgtagatgaatgccaggccattccagggctctgtcaagga
ggaaattgtattaacactgtgggatcctttgagtgcaaatgcccagccggacacagattt
aacgaagtaacacaaaaatgtgaaggtaagaacttaatgaagaaatacaaggttctgcaa
gtgaagtgttccaacacaaagggaagttacttctgcaagtgtcctcaaggctattataca
ccccctgatggctcaagatgtatagatgcgcgaggtgggtactgcttctcaagtctagtg
agtggtcgctgtgccaaccagctcccccagctcctcaccagaatgcagtgctgctgtgac
agtggacggtgctggtctgatgggtctgccccagcaatgtgcccaatgcgtggaactgat
gagtacagaaagctctgctccactcagatcctaatcccaggtcagcctgacccagaatgg
cctgttcctagtgtgccggttggaccagacacccccgtgcatggacagcggcctcttttg
ccacctgatggtggactacccaggcccccaatcaatggacaatctccagtgattcttaca
caaaatataacttttgctgggaatacttgtgaattgtaccggaatctgtgcattaatgga
cgctgtatccctactcctgggagctatcgatgcgagtgtaacatgggattcaggcttgat
gtccgaggagaatgtattgatgatgtcgaatgtgatagaaacccctgtgtcaatggcaat
tgtataaatactcaaggatcttatttctgtcaatgccatgctggttttcaaagcacagca
acaaggacagaatgcagagatattgatgaatgtttggcaaatggcaggatctgcaacaat
ggacgttgtgttaatacagatggcagctttcactgtgtatgcaatgctggcttcgaggta
acatcagacgggcgtaactgtgaagatcaagatgaatgccttattaagaacatgtgtctt
aatgggatgtgcattaatgaagatgggagttttaaatgcatatgcaaatctggcttccag
ttagcaccaaatggacgattctgccaagatattgatgagtgtgagacaccaggcatgtgc
atgaacggacgctgtgtaaacacggaaggctcgtttcgatgtgactgcctccctggtctg
gcagtgggactggatgggcgggtctgtgttgatacacacatgcgcagcacatgttacggg
ggttacaagagggggcaatgtgttaaaccgttctttggagctgtgaccaaatcggagtgt
tgttgtgccaacattgaatatgcctttggagagccttgtcaaccttgcccagcaccaaac
tccgctgaattcaatgcgttgtgcagtaaaggacctggtattacttctgatgggagagat
ataaacgagtgtgccctggatcctgacctttgtcaaaatggagtttgtgagaacctgcac
agaacgtacagatgtaactgcaaccaaggatatgaaatagattcaagtggcaaaaactgt
gttgatattgatgaatgtgcaataaacaggcagttgtgtgaaaacggacaatgcagaaac
acgcccgggagcttcacctgttcctgcccaaagggatatgtctttaaatcggacactgac
gtatgtgaagatattaacgagtgtgaatccagcccttgtgttaacggaaactgcaggaac
aaccctggctcgttcgcctgtgaatgtctccagggaagcacgctagataaaactggaact
gtttgtgttgaaacaggcaaggggacttgctggctgaagataattaatgggcgatgtgag
atcaatatcaatggagagaccctgaagtcacactgctgtgccacaatgggggcagcttgg
ggaagcccttgtgccccgtgtgagccagatccattctgttcaaagggatatgcgagagtt
agagggacaacttgtgaagatgtgaatgaatgtgaagtatttcctggagtttgcaccaat
ggaaagtgtgtaaatacagtgggatcttttatttgtcagtgccccagtggaatgaccctg
gatgccactggtcggacatgcgttggtatatctggggatggacttctaatctcgacgagg
aagatggatgagaggtgctcctctccaatccctggcaaacaccgtgtggatgcgtgctgc
tgttctgtgggcgctgcctggggacctgagtgtgaagagtgcccagagaaacgcacccca
gagtatgatcagctttgccctcgaggcccaggcttctcccacagaggcgattttgtcaac
ggaaggcctttcttgaaagacgtcaatgagtgcaaaatgatccataatctgtgcagtaat
ggcaaatgcaggaacacaatcggtagtttcaaatgcaaatgtgacagtggctttgcactt
gactcagaggaaaggaactgcactgatattgacgagtgtcggatatcgcctgatctttgc
ggacaggggacttgtgtcaacactcccggagactttgcatgtgaatgctttgagggctat
gagagtggatttatgatgatgaagaactgcatggacatcgacgagtgtgaaaggaacccg
cttctgtgccgcggaggggtgtgtgttaacacagagggcagtttcctctgcgagtgcccc
actggccatcaggttgctacggatgggtcggcttgtttagatgttaatgaatgtgagcta
agcgataacctttgcaggaacggccgctgtgtgaatatgatcgggcgctaccagtgtgcc
tgtaacacagggtatagatctactgatgacagattagcctgtgttgatatcgatgagtgc
accatacaaaacggaggatgtgaaaccttttgcacaaactctgaaggaagctatgagtgc
agctgtagggcaggctatgcactgatgccagaccaaagatcatgcacagacattgatgaa
tgtgaggacaatcctgatatttgtgacgggggacagtgcaccaacatccctggcgaatat
cgatgtctgtgttatgatgggtttatgtcatctgaggatatgaagacatgcctagatgtt
gatgaatgcgaactcaatccaaatatctgccttagtgggaactgtgagaacacaaaaggc
tcattcatttgccactgtgacctgggatattcggtgaagaagggaaccactggctgtaca
gatataaacgagtgtgagattggggcccacaactgcgacaaacatgctacctgtactaat
acagctgggagctttaaatgcagctgtggtccaggatggattgggaatggaattaaatgt
gttgatctggatgagtgttctaatggaacgcacatgtgcagtgctaatgcagagtgtaga
aacaccatggggtcttaccggtgtctgtgtaaagagggctactctggagatggcttcttc
tgtacagatagtgacgagtgtgcagagaatgtcaatctctgtgagaatggccactgtctg
aatattcctggtggattccgttgtgattgtgacatgggctttacaccaactgtggatgga
aaagcatgtcaagatattgatgaatgtgtattcccggatatctgtgtctatggaacctgt
cacaatattccaggactgtttcgatgtgaatgtgacacagggtatgaattggacaggact
ggtggcaactgtacagatgtcaatgagtgcgctgatccgacgacttgcatcagtggaatt
tgcgttaacacccctggcagctaccgctgcaactgtcctccaggttttgagctcaacccg
acgcgggttggctgtgtggatacacgttctggcaattgttacctggaattccagccacgt
ggagacgggtctgatgttctgtcctgttctaatgagatcggtgttggcgtttcaaaggct
tcttgttgctgttcgttgggtcgagcttggggtaacccttgtgagcagtgcccgcccatt
aactcttctcattataaaatattatgtccgggtggagaaggcttcagacccaaccccatc
acagtcattcttgaagatatcaatgagtgtctggagttaccggggctttgccaaggagga
aattgcatcaacacgtttggaagcttccaatgtgaatgtccccctggcttttacctaaat
gtagaaacacgagtctgcgatgatgttaatgaatgtgaaacgcctggtatctgtggtcca
ggaacatgttacaatacagtcggaaactatacctgtatttgccctccagactacatgcag
gtcaatggtggaaacaactgtatggatatgagaaggagtctgtgctacaggaattttcat
tctgacaatgggacttgcgatggtgagctgccattcaatatgaccaagaagatgtgctgc
tgctcctataatattggacgtgcctggaacaagccctgtgaacagtgtcctataccgagc
accaatgagtttgcgatcctctgtggaagccagagacctggatttgtaattgacatctat
acagggcagccagttgacattgacgaatgcagggatatccccggagtatgtgagaacgga
gtctgcatcaacatgattggcagctttaggtgtgaatgtccggtgggctttgtgtacaat
gacaaattactgatctgtgaagatattgatgaatgtcagaatggaccagtttgtcaacag
aatgcagactgtctgaacacggcaggcagctatcgctgtgaatgtaaaccaggctacagg
ttcacttctactgggcagtgtattgatcgcaatgagtgtctggaattgcccaatgcatgc
agtcatgggcagtgtattgacattgttggaagcttccgttgcatctgcaataatggattt
aaagcaactgcagatcaaactatgtgtatagatgttgatgaatgcgaacggcaaccgtgt
ggcaatgggacatgtaaaaataccgttggctcgtacaactgcctgtgttatcctggattt
gatctttctcacaacagtgactgcatagatgtggacgagtgttcaaccaatagggggctc
tgcaggcatggcaactgtataaacactgtgggctcattcgtgtgtgtgtgccaggatggc
tacgaactcaccgctgatggcaggagctgtgtcgatattaatgagtgtgtggtgaatcct
ggtacttgcggtcctggaacctgtcagaatttggacgggacctacagatgtatctgccca
cctggattctacttgacagaggagagatgcgaagatattgatgaatgcgcacagagtccg
gatatctgtgtattcggcacgtgctcaaatactcaaggtagttttatatgcaagtgtcca
gaaggcttccaattgtcatcaactgggagaagatgtaatgatataagagtaaacttctgt
tttaccaagtttgagaacgggaagtgttttgctgccaaagccaggaacaccacaaagtca
gcgtgttgctgtagtgccatgccaggggagggctggggcagtccgtgtgaaatctgccct
aaacagaatgaatcggcgttcgctctgctctgcccaggagggtctggccacgatgttggc
aacggggactcccgagttgatttggacgagtgctcatcagacccaggtatctgtaaaaac
ggccagtgcattaatacagacggctccttccggtgtgaatgcccatttggttttagtctg
gattacagtggaataaattgtgaagatacggacgagtgttctgtgggtaatccttgtggc
aatggaacatgcacaaatgtgattggagctttcgaatgtgcgtgtgaagagggctttgag
cctggacccatgatgtcctgtgaagatgtgaacgaatgtgctcagaatcgtctgctctgt
gcttttcgctgtgtgaacattgtgggctcatatgagtgcaaatgtcctgccggctatgtt
ctcagagaagataaaagaatgtgcaaagaccaaaatgagtgtgaagatggaattgatgac
tgtgagtccaaaggaatgctttgcaagaacctgataggactctacatgtgtatctgccca
cctgggtatgtgcgcaggcccaatggagacggctgcattgataagaatgaatgtacagcc
aagccgggcgtctgtgagaacggccgctgcgttaacacagttggcagctacagatgctca
tgccatgaagggtttagtgccagctcctctgagactgaatgcattgacaaccggcaaggg
ttttgcttcactgaggtcctgcagagtctctgccagatgacgtctagcagccgaaacgct
gtcaccaagtctgagtgctgctgtgacggcggccgtggctggggtccgaactgcgagatc
tgccccttgcctggcaccggacagttcaaaaagatgtgcccgcttgggcccgggtacact
accgatgggaaagacattgatgaatgccgtgtcataggaggtctttgtcaaaacggacag
tgcataaataacatgggatcctatagctgcttgtgcaaatctggatatactacagattta
acagggactggctgtgtggatcttgacgaatgcgttcaagcgccgaagccttgcaatttc
atctgcaaaaacattgaagggagctacctgtgctcctgtccaagaggctacatcctccaa
gaagatggaaagagttgtagagaccttgacgagtgctcaaccaaacagcacaattgtcag
ttcttgtgtgtcaacacgattggtgggttcacttgcaaatgcccacctggttttacgcaa
catcacacagcgtgcatcgataacaatgaatgcctgacagaggctggattgtgcggagca
aagggagtctgccagaatactccaggaagcttcagttgtgaatgccagcgtgggtatctg
ctggaccaaagtggacagaactgtgaagatatggacgagtgcgacgggaatcatcgatgc
cagcatggttgtcagaatatgattggagggtaccgatgcagctgccctcaaggttatctt
cagcattaccagtggaaccagtgtgtggatgaaaacgaatgcctcaactcccaggtttgc
gggggagcctcctgccacaataccctcggaagcttccggtgtatctgccccacaggattc
cagtttgaacagttccgaggagcatgccatgacgtcaatgagtgtgcttcctctcagagt
ccctgcagctacggatgctccaacactgacggtggttacctctgtgcctgtccgactggc
tactatagagtgggacaagggcactgtgtatccggagtcggaattggaaatggagaccaa
gcactggcagtagaaggaatgggaggagacacagatgacaactcactttcaccagaagct
tgctatgaatgcaagattaacggctatcccaagaagggcaggaaacgcagaagcaccaat
ggaacagaagctgaacctcagaataactcacaggatgaaaatgagagcatcagccttgcc
agtgtggacattgaagaacctctagtcttcagcttgaacatcactgacttggacaaaaaa
gaccacatcctggagctggtgccagcgctcaccgcactcactaaccacgtccgatacttg
attgatttcggaaacgaggacggcttcttcaaaatcaatcaaaaagaaggaataagctgt
cttcacctgaccaagaagaaacccgtacctggagcctattcgttacaaatcagcagcatc
cctctgtataaaaagaaggagcttgatcatctggaggataaacatgacaaagactacctc
actggtgagctcggtgacatccttaaaatgaaaatccacattattcttcattaa
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integrated database retrieval system
