KEGG   Polyodon spathula (Mississippi paddlefish): 121299711
Entry
121299711         CDS       T07273                                 
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    121299711
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pspa03000]
    121299711
   04121 Ubiquitin system [BR:pspa04121]
    121299711
   03036 Chromosome and associated proteins [BR:pspa03036]
    121299711
Enzymes [BR:pspa01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     121299711
Transcription factors [BR:pspa03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    121299711
Ubiquitin system [BR:pspa04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     121299711
Chromosome and associated proteins [BR:pspa03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    121299711
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     121299711
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like F-box LRR_4 LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 121299711
NCBI-ProteinID: XP_041083585
LinkDB
Position
25:19716412..19726254
AA seq 821 aa
MLPAALYGGSILYVLVRVFWSCCVEVLSFLSWSGYFGLAVLCGGSVLSVLVGVFWSGCIH
TVLCLCFQQKGGGRPKGKLGASAAVKLAANRASAGARRRRTRCRKCEACLRTECGECHFC
KDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEDEEDKFNVMLMECSI
CNEIVHPGCLKVKDAGGVVNDELPNCWECPKCNHAGKTGKVYKQKRGPGFKYASNLPGSL
LKEQRVSRDTKEETEAAAPAKRKVECEETPKRKAQEEPAKKRAPATPDALPRRKTDEGPL
RRKRRQFDKSTEPSIRKKRRSWKTPDDRALIPKPLRQIKTEPEEEEEEDEEEEEEEEEQG
DVEREEEDEGCGDGGGDLSDRTLKTRESDQSRSSSPQAGPSSEGGNEPHEKGRLRARRKR
RLANKELSKELSKELNLEIQKTEDCLAHENCQALKSEPDSENEEPRRNNGASSRSERLHR
SARENGNTRELRNHPRLQQLSPPSTPVSPRPPSSHSPPKCMQMERHVIRPPPISPPPDSL
PLEDGAVHVMRREVWMGVFGYLSHKELCVCMRVCKTWNRWCCDKRFWTKINLNRCKSITP
LMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRVLLLSGCSWVAVSALCTSNCPLL
RTLDVQWVEGLKDTQMRDLLSPPTDNRPGQIDNRSKLRNVVDLRLAGLDITDASLRLIIR
HMPLLSKLDLSYCNHITDQSINILTAVGTTTRDSLTEINLSVCNRVTDQCLTYFKRCGNI
CHIDLRYCKQVCKEGCEQFIAEMSVSVQFGLVEEKLLQKLS
NT seq 2466 nt   +upstreamnt  +downstreamnt
atgttgcctgctgccctgtatggaggttccatcctctatgtcctggtcagggtattttgg
tcttgctgtgtggaggttctatcctttctgtcctggtcagggtattttggtcttgctgtg
ctgtgtggaggttctgtcctctctgtcctggtcggagtattttggtctggttgtattcac
actgtgctgtgtttgtgtttccagcagaagggcggggggaggccgaaggggaagctgggt
gcctcggcggcggtcaagctggccgcaaacagagcctctgcgggggcgcggcgaaggagg
acacgatgccgcaaatgcgaggcctgcctgcggaccgagtgcggggagtgccacttttgc
aaggacatgaagaaattcggggggccaggcaggatgaagcagtcctgcatcatgaggcag
tgcatcgcgcctgtgctcccccacactgcggtgtgcctggtctgtggagaggctggcaag
gaggacactgtagaggacgaggaggacaagttcaacgtcatgctgatggaatgttccatt
tgcaatgagatcgtgcaccctggctgcctgaaggtgaaggacgcaggcggagtggtgaac
gacgagcttcccaactgctgggagtgtccgaagtgcaaccatgccgggaaaaccgggaaa
gtctacaagcaaaagagaggtccagggtttaagtacgcctccaacctgcctggatcactg
ctgaaagagcagagagtgagccgggacaccaaggaggagacggaggctgccgctcctgcc
aaaaggaaggtggagtgcgaggagactcccaaacgcaaagcccaagaggagccagccaag
aaacgagcgcctgcaacgccagacgccctgcccaggaggaaaacggatgaggggccgctg
aggaggaagaggaggcagtttgacaagagcacggagcccagcatcaggaaaaagaggaga
tcttggaagaccccagacgaccgcgcgctgatccccaaacctctgcggcagatcaaaacc
gagccggaggaggaggaggaggaggatgaggaggaggaggaggaggaagaagagcagggg
gacgtggagagggaggaggaagatgaaggctgcggggatggagggggggatctctctgat
cgcaccctgaagacgagagagagcgaccagtcccgctccagctctccgcaggctgggccc
agcagtgagggaggcaacgagccccatgagaagggcaggctccgggcgcggcggaaacgc
aggctggccaacaaggaactgagcaaagagctgagcaaggagctcaacctggagatccag
aagacggaggactgcctggcccacgagaactgccaggcactaaaatcagagccggatagc
gagaacgaagagcccaggaggaataacggtgccagcagcaggagcgagcggctgcacagg
agtgcacgggagaacgggaacacgagggagctgaggaaccatccccgactccagcagctc
tccccccccagcactcccgtgtctccccgccccccctcctctcactcccccccgaagtgc
atgcagatggagcgtcatgtgatccggccgccgcccatcagccctcctcctgactccctg
cctctggaagacggggcggtgcatgtgatgcgcagggaggtgtggatgggcgtgttcggg
tacctgtcccacaaggagctgtgtgtctgcatgagagtctgcaagacctggaatcgatgg
tgttgtgataagaggttctggacaaaaatcaatctgaaccggtgcaaatcaatcactcct
ctgatgctcagcggcatcatcaggaggcagcctgtgaccctggacctcagctggacgaat
atatcaaaaaaacaattaagctggctcattaatagattaccaggtctgcgggtgctactg
ttatcagggtgctcctgggtggcagtgtcagcactctgcacgtctaactgccccttgctg
cggaccttggacgtccagtgggtcgaagggttaaaagacactcagatgagagacctgctc
tctcccccaactgacaacagaccaggtcaaatagacaatcggagtaaactgaggaatgtt
gtagacttgcgtctggcgggattggatattacggacgcttcacttcgtcttataatcaga
cacatgcctttactttccaaactggatctcagttactgtaaccacataactgaccagtct
attaacattctaactgcagtgggcaccaccactcgggattccctaacagagattaatctg
tcagtttgcaatagggttactgaccagtgcctgacctacttcaaacgctgtggaaacatc
tgtcacattgacttgcggtactgcaaacaagtgtgcaaggaaggctgtgaacagttcata
gcagagatgtctgtaagcgtacagtttggactggtagaggaaaaactactgcaaaaactg
agctag

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