Polyodon spathula (Mississippi paddlefish): 121299819
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Entry
121299819 CDS
T07273
Name
(RefSeq) plakophilin-1-like isoform X1
KO
K10387
plakophilin 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121299819
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pspa04812
]
121299819
Cytoskeleton proteins [BR:
pspa04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
121299819
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
HEAT
Adaptin_N
HEAT_EZ
ZER1-like_2nd
ELMO_ARM
Arm_2
HEAT_EF3_N
Atx10homo_assoc
Cnd1
UBQLN1
ARMC9_ARM
ARM_PUB
Motif
Other DBs
NCBI-GeneID:
121299819
NCBI-ProteinID:
XP_041083857
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Position
25:6256584..6277162
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AA seq
710 aa
AA seq
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MSSRNVTTTSTYFKTATVPASFPRVDSTSLALPSDKTMLSGGTLGQQRVTEQVYSTLKRN
KTTQRNESNSSKESSTRQNEFSFKMSPTTPTGSGFFSSNVSGNQYSNYSLKKQNSLPPMK
YRNNSMGFSKRQFSYNNQRESQFSPTSPVNGFQTYKTMTTSRSEPDIPQVAKSPTLLDYQ
NKRHSAYRYMTLPIVTGTQVQTTANQFNSHQTMVDSGGMAVSKLTLREAVDCLGQRDENL
QYSGASFIQHSSFQKDKTRQEVYSLGGIPKLVDLLSSKSPEVQQAASGALRNLVFKCQTN
KMEVKRNNGIYEALKLLRQTDCPEIQKQLTGLLWNLSSAEELKPELVRDALPVLTEKVVV
PFAGWSEQDVQLDSSLDSEIFYNATGCLRNLSSANQSDRDAMRNCWGLVDSLVSYVQACV
SADRPDDKSVENCVCILQNLSYQLEREAPAQFSQIISLASSPTRDLSTNDSSSMGCFSPR
SSQISQENSFSPPILEDSNPKGMGWLFNSKTMQTYLSLMGKSKKDATLEACASALQNITA
NSGIVSNVMSQTIVQKLNGLPEVSRLLKSSNPGVQKTAMSLLGNLSRNPSLQSVMSRQIL
PDITQVLTSGARNTACSDDMMAAACHTIRNLVVSNPESAKGVMGNSVLSTLCDLSRNGYS
PKSSKAAAILLYDLWGQKELQSFFKKQGVNKNIFVNDITNSAYKTLQGVM
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccagaaacgtgacaacaacgtcaacttattttaagacggcgacagtccccgcg
agtttcccccgggtggatagcacgtcgctggcgctgccttcggacaagactatgctatct
gggggtaccctcggacagcagcgcgtaacggagcaggtttacagcacgttgaagagaaac
aagacaacccagagaaatgaaagcaactcctcgaaagaaagctcaacacgacagaatgaa
ttcagtttcaagatgtcccccacaacgcctacaggaagtggtttcttttcaagcaatgtc
agcggaaaccaatacagcaattacagtttgaaaaaacagaatagcctgccgcctatgaaa
taccgtaataacagcatggggttctcaaaaagacagttcagctacaacaaccagagggag
agccagttctcacccaccagcccagttaacggcttccaaacctacaagaccatgactacc
agtcgaagtgagcctgatataccacaggtcgccaagtcgcccacactgctcgactaccag
aacaaacgccacagtgcgtacaggtatatgaccttgcccattgtaactggaacccaagtc
caaactacagccaaccagttcaactcacatcagacaatggtagacagcggtggcatggca
gtttcaaaactcacccttcgcgaggctgtggattgccttgggcagagagatgagaacctg
cagtacagcggcgcctctttcatccagcactccagcttccagaaggacaagacaaggcag
gaggtgtattctcttggtgggattcccaagctcgtggacctgctcagcagcaaaagcccc
gaggtccagcaggcagcctccggtgcgctccgcaacctggtcttcaaatgccagaccaac
aagatggaggtgaagaggaacaacggcatctatgaggctctgaagctactgaggcaaacc
gactgcccggagatacagaaacagctcacagggctgctgtggaacctgtcctcggctgaa
gagctgaagccagagctggtcagagacgctctcccagtcctcactgagaaagtggtggtg
ccctttgcaggctggtcagagcaagatgtccagctcgacagcagcctggactcagagatc
ttttacaatgccacaggctgcctcagaaacctgagctcggcaaaccagagtgaccgcgac
gccatgcgcaactgctggggtctggttgactctctggtcagctacgtccaggcctgcgtg
agcgctgaccgtcccgatgacaagtcagtggagaactgcgtttgcattctacaaaacctg
tcgtaccagctggagcgggaggcccctgcccagttcagccagatcatctccctggccagc
tccccgacccgggacctctccaccaacgactcctcgtccatgggctgcttcagcccacgt
agcagccagatctcccaggagaactccttttctcctcctatcctggaggacagcaacccc
aaagggatgggctggctgttcaactccaagaccatgcagacgtacctgtcactgatggga
aagagcaagaaggatgcaacactggaggcctgtgccagcgcgctgcagaacatcactgcc
aacagcggaatagtgtccaatgtgatgagccagaccattgtgcagaagctcaacgggcta
ccagaggtatcgcggctcctcaagtccagtaacccaggcgtccagaagactgccatgtcg
ttgctgggcaacctatctcgaaaccccagcctgcagagcgtcatgagtcgtcagatcttg
cctgacatcacgcaggtcctcaccagtggagcacgcaacacggcctgctcagacgacatg
atggccgcagcctgccacaccatccgcaacctcgtggtctccaaccctgagtcagccaag
ggagtaatgggcaacagtgtgctgtccacgctctgcgacctcagcagaaacggatattcc
ccgaaatccagcaaagccgccgccatcctgctgtatgacctctgggggcagaaggagctt
cagagtttctttaaaaagcaaggggtgaacaaaaatatctttgtgaatgacatcaccaat
tcagcctataaaaccctgcagggggtgatgtga
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