Polyodon spathula (Mississippi paddlefish): 121301938
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Entry
121301938 CDS
T07273
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121301938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121301938
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121301938
Complex C
U5 SnRNP specific factors
121301938
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
121301938
NCBI-ProteinID:
XP_041087597
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All DBs
Position
28:7971052..7995024
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AA seq
970 aa
AA seq
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METDLYDEFGNYIGPELDSDEEDDLDRDARDVDEEDEDDEEEPADPDEEHPGMEVVLHED
KKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDQDLRYTDILFTEQERGVGIK
STPVTMVLPDSRDKSYLFNIMDTPGHVNFSDEVTSGIRISDGIVLFIDAAEGVMLNTERL
IKHAVQERLAVTICINKIDRLMVELKLPPTDAYYKLRHIVDEVNSLLSMYSTDENLIVSP
LLGNVCFSSSQYSICFTLGSFAKIYSDTYGDISYNEFAKRLWGDIYFNPKTRKFTKKAPN
SNSQRSFVEFVLEPLYKILAQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCKK
FFGEFTGFVDMCVQHIPSPQDGAKNKIEHSYNGGLDSDLGEAMAECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTIGRLWISVARYQIEVN
RVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagatctgtacgacgagttcgggaactacatcgggccggagctggactcggac
gaggaggatgacctggaccgggacgcccgtgatgtagacgaggaggacgaggatgatgag
gaggagccggctgatccagatgaggagcaccctgggatggaggtggtgctgcatgaggat
aagaagtactaccccactgcggaggaggtgtacgggccagaggtggagaccatagtccag
gaggaggacacccagcctctcacagagcccatcatcaaaccagtcaagacaaagaagttt
acactgatggagcaggagctgcccagcactgtctacgacatggagtttctggctgatctg
atggacagtccggagctgatcagaaacgtcaccctctgtggacacctgcaccacggcaag
acgtgcttcgtggattgcctgatcgagcagacccaccctgaaatcaggaagagggacgac
caggatctccgctacactgacattctcttcacagagcaggagaggggtgttgggatcaag
agcaccccggtgacaatggtgctgccggactccagagacaagtcctacctgttcaacatc
atggacacgccaggccatgtgaacttctctgatgaggtgacctcagggatcaggatctcc
gatggcatcgtgctctttattgatgcggccgagggggtgatgctgaacacagagcggctg
attaagcacgctgtgcaggagcgtctggccgtcaccatctgcatcaacaagatcgaccgg
ctcatggtggagctgaagctgccgcctaccgacgcctactacaaactgcggcacatcgtg
gacgaggtcaacagcctgctcagcatgtactccacggatgagaacctgatcgtgtctccc
ttgctggggaacgtgtgcttctccagctcccagtacagcatctgcttcacgctgggctcc
ttcgccaagatctactccgatacctacggtgatatcagctacaatgaattcgctaagagg
ctctggggagacatctacttcaaccccaaaacgagaaagttcaccaaaaaggctccaaac
agcaactcccagcgcagttttgtggagtttgtcctggagccgctgtacaagatcctggcc
caggtggtgggtgatgttgacacctcccttcctcgggtgctggatgagctggggatccac
ctgaccaaggaagagctcaaactgaacatccgcccgctgctgcgcctcgtctgcaagaag
ttcttcggggagttcacaggttttgtggacatgtgtgtacagcatatcccttctccacaa
gatggcgctaagaacaagattgaacattcgtacaatgggggcctggactctgatttgggg
gaggccatggcagagtgcgaccctgacggcccgctgatgtgccacaccactaagatgtac
agcacggaggacggggtgcagttccatgccttcgggagggtgctgagcggcactatccac
gcagggcagcccgtcaaggtgctgggggagaactacaccctggaggacgaggaggactcg
cagatctgcaccatcggacgcctctggatctctgtggccaggtaccagatcgaagtgaac
agagtgcccgctggcaactgggtgctgatagaagggtgcgaccagcccattgtcaagact
gccaccatcacagagccgcggggcaacgaggaggctcagatctttaggcccctgaagttc
aacactgcctctgtgattaagatcgctgtggagcccgtcaacccctccgagctgcccaag
atgctggacggcctgaggaaggtcaacaagagctacccctccctcaccaccaaggtggag
gaatccggggagcatgtgatcctgggcactggggagctctacctggactgtgtgatgcac
gacctccgcaagatgtactctgagatcgacatcaaggtggcggaccctgtggtgacgttc
tgtgagacggtggtagagacatcctccctcaagtgttttgctgagacccccaacaagaag
aacaagatcaccatgattgcagagcctctggagaaagggctggctgaggacatcgagaac
gaagtggtccagatcacgtggaacaggaagaagctgggagaattcttccagacgaagtac
gactgggatctgctggcggctcgttcgatctgggcgttcggtcctgataccacgggtcca
aatattctggtcgatgacacgctaccttcagaggtggacaaggccctgctgggctccgtg
aaggacagcatcgtgcagggcttccagtggggaaccagggaggggccgctgtgcgatgag
ccgatccgcaatgtgaagtttaagatcctggacgcagtgatcgctcaggagccgctgcac
agaggaggagggcaggtcatccccacggcccgcagagtggtttactccgctttcctcatg
gccacccctcgtctgatggagccctactactttgtggaggtccaggctccggctgactgt
gtctctgctgtgtacaccgtgctggctcgcaggagaggtcatgtgacccaggacgccccc
atccctggttcccctctctacaccatcaaggccttcatcccggccatcgactcgttcggc
ttcgagacagacctccgcactcacacccagggacaggccttctccctgtctgtattccac
cactggcagattgtgccgggtgaccccctggataagagcatcgtgatccgtcctctggaa
ccccagccagctcctcacctggccagagaattcatgatcaagacccgtcggcgcaagggt
ctcagcgaggacgtcagcatcagcaagttcttcgatgatcccatgctgttggagctggct
aagcaggacgtggtgctcaactatcccatgtag
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