Polyodon spathula (Mississippi paddlefish): 121302165
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Entry
121302165 CDS
T07273
Name
(RefSeq) NPC1-like intracellular cholesterol transporter 1
KO
K14461
Niemann-Pick C1-like protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121302165
Transporters [BR:
pspa02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
121302165
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
Folate_rec
Cytochrom_B558a
Motif
Other DBs
NCBI-GeneID:
121302165
NCBI-ProteinID:
XP_041087917
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Position
29:complement(6011750..6033011)
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AA seq
1313 aa
AA seq
DB search
MNSVFVYALCHIVVGLVSCTQIHQEGYCTFYDECGKNPTVSGSLIPAIIPCKYNGPAKAL
AGLHLQKLQEVCPMLYKGVATQACCSLEQLNSLQKSLLLSKPILSRCPSCVENFVNIYCQ
NTCNPNQSLHINITRTWNATINGVIKEAVIEYQAYLSREFADRSFDSCKNVRIPATGGFA
IATMCGKYGSTLCNTQRWLDFQGNSGNGLAPLDIDFRLIDNDTQVGQGIVPLTTRVWSCN
ESTSPEQDACSCLDCVESCPIIPPPVPDSGLFKIGQLDGVLVVCLVVFCGLSVSFVGFLL
VSNLYSGRKSQNKDKNGNEVKKEVHLHEVSCTDKASLATQDFLGSFFQKWGTMVASHPIK
VILISLIAVLVLSVGLFFIKLTTDPVELWSSPNSRAMKEKAFHDANFDHFFRTNQIILTA
PNHKGYTYNSLLFGRQNFSGLLSKDLILELLEFQTRLQAIQFWSDEAGRTISLKDVCYAP
LNPTNPSLTDCAVNSLVQYFQNSRENLEAKINMTVNGQTGEVDWRDHFLYCINSPLSFKD
ITDLGLSCMSDYGAPVFPFLAVGGYSNEDYSEAEALILTFSLNNFQRDTLGFELALRWEQ
KFLDLVQEYQRNPSTNFTFTYMAERSLEDEINRTTMEDIPIFMISYAVIFVYIALALGEY
SSFKSVLVNSKIVVGLGGILVVGCAVLSSMGFYAWIGIPSSLIILQVVPFLVLAVGADNI
FIFVLEYQRGKRKPGERMEEHIGRVLGNVAPSMLLCSLSESICFFLGALSTMPAVRSFAL
YAALAVFLDFLLQMSAFVALLSLDARRQDSSRCDVLCCIPVKNTTRIKKSDGFLLPLMRD
YYAPFLLHSTTRIIVMLLFLFMFCACFFLMFHVRVGLDQDLSVPTDSYMLDYFKYLYKYF
EVGIPTYFVTTRGYNFSSIEGMNGVCSSVGCNNNSMTQKIQYATTFPKESFLAIPASSWV
DDFIDWLNPISKCCRLHSFGPQQGKFCPSTSTSVCLRKCMPLGSGTVRPTVEQFNQYLPN
FLSDLPNLQCSKGGLGAYDKAVVRGEDGEILASRFMAYHTPLTNSEAFTEALRRARELAD
NITRSMRQIPGTDPDFQVFPYTITYVYFEQYLTIVNEGLFILSLCLLPTFVVCSILLGMD
MRSGLLNLITIIMITVDTVGVMTLWSIDYNAVSLINLVTAVGISVEFVSHLTRSFAISTQ
PTRLERAKEATANMGSAVFAGVAMTNLPGIIVLAFAKAQLIQIFFFRLNLVITLLGMLHG
LVFLPVLLSYLGPEVNKALLLELQRQESRSNKDIEITQISGSNSYSNYAFEDH
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgaactccgtctttgtttatgccttgtgtcatatcgttgtgggtctggttagctgtacc
cagatccaccaagagggatattgcaccttctatgatgagtgtggcaaaaaccccactgtc
tccggcagcctgatccctgcaatcatcccctgcaagtacaatggaccagccaaggcattg
gcgggcctccacctacaaaagctgcaggaagtctgccccatgttatacaagggagtcgcc
acccaagcatgctgctctttagagcagcttaactctctccaaaaaagcctattactctcc
aagcccatcctgagccgctgtccgtcctgtgtcgagaactttgtaaatatctactgccaa
aacacatgcaaccctaaccagagcctgcacattaacatcacccggacctggaatgccacc
ataaatggcgtcatcaaagaggccgtcattgagtaccaggcctatctctcacgtgaattc
gcagaccgctccttcgactcctgcaagaacgtgcgcatcccagccacaggaggcttcgcc
atcgcaaccatgtgcggcaaatatggctccactctctgtaacacccagcgctggttggac
ttccaagggaacagtggcaacggcttagctccgttggacatcgacttccgactgatagac
aacgacacccaagtggggcagggcattgtgcccttaactacccgagtgtggagctgcaat
gaatccacctccccagaacaagatgcttgttcctgtctggactgtgtagagtcttgcccc
ataatccccccacctgttcctgattcagggctctttaaaatcgggcagctggatggggtg
cttgtagtctgcctggttgttttctgtggcctctcagtctcctttgtgggctttctgctt
gtgtcaaacctctacagtgggcggaaatctcagaacaaggataagaacggcaacgaggtc
aaaaaagaggttcaccttcacgaggtgagctgcactgataaagccagcttagctactcag
gatttcctgggctccttcttccagaaatgggggacaatggtggcctcccaccccatcaag
gtaattctgatctctctgattgctgttctggttttatctgttggactgttttttatcaag
ctgacgactgaccctgtagagctgtggtcatctcctaatagccgtgcaatgaaggaaaaa
gctttccacgacgccaactttgaccattttttccggaccaatcagatcatcctaacagcc
cccaaccacaagggatatacctacaactcccttctcttcggcaggcagaacttcagtggg
ctgctctccaaggatctcatcttggagctcctggagttccagaccagactgcaggccatc
cagttttggtcggatgaggcagggcggaccatcagcctcaaggatgtttgttacgccccc
ttaaaccccacaaaccctagcctgactgactgtgccgtcaacagcctggtgcagtacttc
cagaacagccgtgaaaacctggaggccaaaataaacatgacagtgaatgggcagactgga
gaggtggactggcgggatcatttcctctactgcatcaactctccactctcctttaaggac
atcactgaccttggcctgagctgcatgtcagactatggggctccagtctttcctttcctg
gctgtgggaggctacagtaatgaggattactcagaagcagaggccctcatcctgactttc
tccctgaacaacttccagcgggacacactggggtttgagctggctctgcgctgggagcag
aagttcttggatttggtgcaggagtatcagaggaacccctccacaaacttcacctttacc
tacatggcagagagatcactggaagatgaaattaatcgcactacaatggaggacatcccc
atcttcatgatcagctatgcagtgatcttcgtctacattgccctggcgctcggagagtac
tcttctttcaaaagtgtgctggtcaactcgaagatcgtggtgggtctggggggaatcctg
gtggtgggctgtgcagttctctcctccatgggattctacgcctggatcgggatcccctcc
tcgctcatcatccttcaggtcgtgcccttcctagtcctggctgtcggagctgacaacatc
ttcatcttcgttctggagtaccagagaggcaagcgaaagccgggagagaggatggaggag
catatcggaagagtcctgggcaacgtggctccgagcatgctcctctgcagcttgtccgag
tccatctgtttcttcttaggggccctcagtactatgcccgcagtgaggtcgttcgcgttg
tacgcagccctcgccgttttcttggacttcctgctccagatgtctgcattcgtggcactc
ctgtctctagatgcccggcggcaggacagctcccgctgtgacgtgctctgctgcattccg
gtgaagaacaccacgaggataaagaagagcgacggcttcctgcttcctctcatgagagat
tactacgctcccttcctcttgcatagcaccaccaggatcatagtgatgctgctgttcttg
ttcatgttctgtgcctgtttcttcctgatgttccatgtgagagtgggtctggatcaggac
ttgtcagtgccgacggactcctacatgctggattacttcaagtacctgtacaagtatttc
gaggtgggcatccccacctactttgtgaccacgcgagggtacaacttctccagcattgag
ggcatgaatggggtctgctccagtgtgggctgtaacaacaactccatgacacagaaaatc
cagtatgccacaacattccccaaagaatcctttctggcaatcccagcctcctcttgggtt
gacgactttatcgactggctgaacccgatttcgaagtgctgtcgtttacactcctttggt
ccccaacaggggaaattctgtccgtcaacaagcacctctgtctgcttgagaaagtgtatg
ccactgggttctggcacagtgaggcccactgttgagcagttcaaccaatacctccccaac
ttcctgagcgacctgcctaacctacagtgctccaaagggggcctgggagcctatgacaaa
gctgttgttagaggagaggatggagaaatattagcctcacgtttcatggcctaccacacc
cccctcaccaattcagaggcgttcacggaggccctgaggagagccagggagctcgctgac
aacatcaccaggagcatgaggcagattccaggcacagaccctgacttccaggtcttccct
tacacgatcacgtacgtgtattttgagcagtacctgacgatcgtgaatgaggggctcttc
atcctgtcgttgtgcctgctccccaccttcgtggtgtgcagtatcctgctgggcatggac
atgcgctctggcctcctcaacctcatcaccatcatcatgatcacggtggataccgttggg
gtcatgaccctctggagcattgactacaatgccgtgtcgctcatcaacctggtcacggct
gttggcatttctgtggagtttgtctctcacctgacccgctcctttgccatcagcacccaa
cccacccgcttggagagagccaaggaggccactgctaacatgggcagcgctgtgtttgcg
ggcgttgcgatgacgaacctccctggcatcatagtcctggcattcgccaaggcgcagctc
atccagattttcttcttccggctcaacctggtcatcacattgctggggatgctgcacggc
ctggtcttcctgcccgtgcttctgagctacctcggcccagaagttaacaaagccctgcta
ttggagctccagcgccaggagagccggagcaataaagacattgagatcactcagatcagt
ggcagtaactcctattcaaactatgctttcgaggaccactag
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